Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Polysphondylium_20violaceum_20[genbank_20GCA_5F000277445.1_202012- 07-09] 1,228 sequences; 25,723,383 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq2 257 2e-63 >seq2 Length=160969 Score = 257 bits (284), Expect = 2e-63 Identities = 411/588 (70%), Gaps = 8/588 (1%) Strand=Plus/Minus Query 79318 TCGGGCAGGCCCGGGCACTCGTGCGGGCACATCAGGTGCCAGTCCTCGTCCTTCTCAACC 79377 |||| || ||| ||| |||| || || | ||| ||| || ||| | ||| || Sbjct 38848 TCGGCCAAGCCAGGGGCTTCGTTGGGACAAAAGAGGGACCAATCGGCGTTTTGCTCGACT 38789 Query 79378 TTCTCCATGAAGAGGTCCGGGATCCACAGGGCCGTGAAGAGGTCGCGGCAACGCATCTCC 79437 | ||||| |||||||| || ||| ||||| |||||||| | | | ||| ||| Sbjct 38788 CTTTCCATAAAGAGGTCACTGACCCAGAGGGCGTAAAAGAGGTCTCTGGCTCTCATTTCC 38729 Query 79438 TCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCC 79497 || | ||| |||||| || |||| ||| || | || ||||||||||| |||||| Sbjct 38728 TCTTTGCCGTGGTTCTTTTTCAAATCGATAAACTCAAAAATATCGGCGTGCCATGGCTCC 38669 Query 79498 AGATAGATGGCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTG 79557 | |||| ||| || | |||||| | |||||| ||||| |||| |||||| | ||| ||| Sbjct 38668 AAGTAGACGGCAAAGGCACCCTTTCTCTTGCCACCGCCTTGGTCGACGTATCTGGCAGTG 38609 Query 79558 TTGTTGAAAACTCGGAGCATGGGCACGATGCCGTCGGCGACGCCGTTCGTCCCGTTGATT 79617 | || || || || |||||||| || || |||| || |||||| || || ||| Sbjct 38608 TCATTAAAGACACGAAGCATGGGGACAATACCGTTGGATGTGCCGTTGGTGCCACGGATA 38549 Query 79618 CGTGTACCGCTCGCCCGAATGTTCGAGCAGTGGATTCCGATGCCCCCGGACCACTTGGAG 79677 | | ||| || | || || ||| ||| || ||||| |||| | || | Sbjct 38548 TAACTGCTGCTGGCTCTGATCTTGTGACAGGCGATACCAATGCCACCGGCAGATTTACTG 38489 Query 79678 ATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCCTCGATCGAGTCGTCCTTCATAGCG 79737 ||| | || |||| ||||| || || ||||| || || |||||||| |||||||| Sbjct 38488 ATGAGGGCACACTGTTTGAGAGTGTCATAGATACCGTCTATCGAGTCTTCCTTCATTTGC 38429 Query 79738 ACCAGGAAGCAGCTCGACATCTGTGGGTTGTTCGTACCGGCGTTGAAGAGGGTCGGCGTC 79797 || ||||| || || |||||||| |||||| ||||| | ||| |||||||| || || Sbjct 38428 ACGAGGAAACAACTTGACATCTGAGGGTTGGGTGTACCCGAGTTAAAGAGGGTGGGGGTG 38369 Query 79798 GCGTGCGTGAAGAACTTTTGGCTCATCAGATCGTACGTCTCCTTGACGCGCGG----GAG 79853 ||||| || |||| ||||||||| | |||||||| ||||| || | |||| | Sbjct 38368 GCGTGGGTAAAGAGCTTTTGGCTGAGGAGATCGTAGGTCTC---GA-GAGCGGCGTCCAA 38313 Query 79854 GTCGTCGCCGTGGATGCCGACCGCGACGCGCATGAAGAGGTACTGGGG 79901 ||||||||||||||||| | || ||| ||||| || | || ||||| Sbjct 38312 ATCGTCGCCGTGGATGCCCAACGAGACACGCATTAACATGTGTTGGGG 38265 Score = 201 bits (222), Expect = 1e-46 Identities = 390/573 (68%), Gaps = 2/573 (0%) Strand=Plus/Plus Query 19115 TTCATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCC-CGCGAGTCCGCGAGACATA 19173 || ||||| ||| || | |||||||| |||||||| | ||| || |||||| || Sbjct 38277 TTAATGCGTGTCTCGTTGGGCATCCACGGCGACGATTTGGACGCCGCTCT-CGAGACCTA 38335 Query 19174 CGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTCAACGCCGGTAC 19233 ||| || | ||||| ||| |||| || ||||| || || ||||| || ||| | ||||| Sbjct 38336 CGATCTCCTCAGCCAAAAGCTCTTTACCCACGCCACCCCCACCCTCTTTAACTCGGGTAC 38395 Query 19234 GAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGG 19293 |||||| |||||||| || |||||||| ||| |||||||| ||| || || || Sbjct 38396 ACCCAACCCTCAGATGTCAAGTTGTTTCCTCGTGCAAATGAAGGAAGACTCGATAGACGG 38455 Query 19294 CATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGGGAT 19353 ||||| || || ||||| |||| || | |||| || | |||| || || || || Sbjct 38456 TATCTATGACACTCTCAAACAGTGTGCCCTCATCAGTAAATCTGCCGGTGGCATTGGTAT 38515 Query 19354 CCACTGCTCGAATATCCGGTCGAGTGGTACACGAATCAATGGGACGAACGGAGTAGCCGA 19413 | ||| || ||| | | || | | ||| ||| || ||||| | || | Sbjct 38516 CGCCTGTCACAAGATCAGAGCCAGCAGCAGTTATATCCGTGGCACCAACGGCACATCCAA 38575 Query 19414 CGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTCAACCAGGGGGG 19473 |||||| ||||| ||||| || ||||| || |||| ||||| |||||| |||| || || Sbjct 38576 CGGTATTGTCCCCATGCTTCGTGTCTTTAATGACACTGCCAGATACGTCGACCAAGGCGG 38635 Query 19474 CGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGGACGTCATGGA 19533 ||||| | ||||| | || ||| ||||| | |||||||||||||| || | | || Sbjct 38636 TGGCAAGAGAAAGGGTGCCTTTGCCGTCTACTTGGAGCCATGGCACGCCGATATTTTTGA 38695 Query 19534 TTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTCGCGACCTCTTCAC 19593 || |||| || |||||| || | ||||| ||| | | |||||||| Sbjct 38696 GTTTATCGATTTGAAAAAGAACCACGGCAAAGAGGAAATGAGAGCCAGAGACCTCTTTTA 38755 Query 19594 GGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACGAAGAATGGCACCT 19653 ||| | ||| | ||||| || ||||| | || ||| | ||| || ||| ||| Sbjct 38756 CGCCCTCTGGGTCAGTGACCTCTTTATGGAAAGAGTCGAGCAAAACGCCGATTGGTCCCT 38815 Query 19654 GATGTGCCCGCACGAATGCCCTGGCCTACCCGA 19686 | || || ||||| ||||||| | |||| Sbjct 38816 CTTTTGTCCCAACGAAGCCCCTGGCTTGGCCGA 38848 Score = 159 bits (176), Expect = 4e-34 Identities = 390/581 (67%), Gaps = 15/581 (3%) Strand=Plus/Plus Query 20250 ACGGCCCGTACGAGACGTTCAAGGGGTCGCCCGCGTCCGAGGGTATCCTCCAGCCGGACA 20309 |||| | || || || || | || || || || || ||||||||||||| |||| Sbjct 39442 ACGGTGCCTATGAAACCTTTGAAGGCTCACCAGCCTCTAAGGGTATCCTCCAATATGACA 39501 Query 20310 TGTGGGGCGTCACTGAGAATG-AGTTTTGGA--GCGCC---CTCAAGGTTGAGATCAAGA 20363 ||||||| |||||| | | || ||| | ||| ||||||| |||||||| Sbjct 39502 TGTGGGGTGTCACTCCATCTCCACGTTGGGACTGGGCCAAACTCAAGGAAAAGATCAAGG 39561 Query 20364 CCCACGGGCTTCGCAAC--TCGTTGCTCGTCGCGCCCATGCCGACCGCCTCGACCGCCCA 20421 || ||| ||| | ||| || || | | || || ||||| |||||| ||| | || Sbjct 39562 CCACCGGTCTTAGAAACAGTCTTT--TGATTGCCCCAATGCCAACCGCCAGCACCTCTCA 39619 Query 20422 GATCATGGGGAACAACGAG-GCTTTCGAGCCGTACACGACCAACATCTACTTGCGTCGTA 20480 || | || ||||| ||| ||||| ||||| ||||| ||||||| ||| |||||| Sbjct 39620 AATTCTCGGAAACAATGAGTGCTTT-GAGCCATACACATCCAACATTTACAGTCGTCGTG 39678 Query 20481 CACTGGCCGGTGAGTTCGTCATGGTAAACAAGCACCTGGTCCGCGACTTGCAGAAGATCG 20540 |||||||||| ||| ||| ||||| || || || || ||| | | || | | Sbjct 39679 TGTTGGCCGGTGAATTCACCATTGTAAATAAACAACTCCTCACCGATCTCATGGAGCTTG 39738 Query 20541 ATATGTGGTCGCCCAAAATTAAGAATGAAATTGTCCGAGCCGGCGGGAGCGTCCAGGC-A 20599 | | |||||||| | || ||||| |||| | | | | || || |||| | | Sbjct 39739 GTCTATGGTCGCCAGAGATCAAGAACCAAATCATTCTCCACAGAGGCAGTATCCAAGATA 39798 Query 20600 TTG--GATATCCCCCAGAACCTCAAGGACATTTACAGGACCGTATGGGAAATCCCACAGA 20657 ||| || |||||| | | ||||| || | |||| || || |||||||| | || | Sbjct 39799 TTGAGGAAATCCCCGACGATCTCAAAGAGCTCTACAAAACAGTCTGGGAAATTCGTCAAA 39858 Query 20658 AGAGCATCATCGACATGGCGGCCGATCGCGGCGCCTACATCGACCAGTCCCAGTCGCTCA 20717 | | |||| |||||||| ||||| || || |||| || ||||| |||| ||| Sbjct 39859 GAACCCTCATTGACATGGCCGCCGAGCGTGGTGCCTTTATTGACCAAAGCCAGAGCTTCA 39918 Query 20718 ATGTCTTCATGGAGAATCCGAGCCTGGCGAAGCTGAGCTCCATGCATATGTACGGCTGGC 20777 ||||||| || | | || | | | | || || | || ||||| | ||| |||| Sbjct 39919 ATGTCTTTATTGCTGAGCCCACCTTTTCCAAACTCACATCGATGCACTTTTACTCCTGGA 39978 Query 20778 ACAAGGGGCTCAAGACGGGCATGTACTATCTGCGGACCCGA 20818 | ||||| |||||||| || ||||||||||| || ||| || Sbjct 39979 AAAAGGGTCTCAAGACCGGTATGTACTATCTCCGTACCAGA 40019 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548516380144320