Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Polysphondylium_20violaceum_20[genbank_20GCA_5F000277445.1_202012- 07-09] 1,228 sequences; 25,723,383 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq2 232 7e-56 seq98 105 7e-18 >seq2 Length=160969 Score = 232 bits (256), Expect = 7e-56 Identities = 386/555 (70%), Gaps = 2/555 (0%) Strand=Plus/Plus Query 53192 TTCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTAC-ACGCGTGTCCGTGAGACGTA 53250 || ||||| ||| | ||||| |||||||| ||||| | |||| || ||||| || Sbjct 38277 TTAATGCGTGTCTCGTTGGGCATCCACGGCGACGATTTGGACGCCGCTCTC-GAGACCTA 38335 Query 53251 CGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTAC 53310 ||| | | ||||||||| |||||| |||||||| || ||||| || ||| | ||||| Sbjct 38336 CGATCTCCTCAGCCAAAAGCTCTTTACCCACGCCACCCCCACCCTCTTTAACTCGGGTAC 38395 Query 53311 GAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGG 53370 ||||||||||||| || || ||||| ||| |||||||| |||||||| ||||| Sbjct 38396 ACCCAACCCTCAGATGTCAAGTTGTTTCCTCGTGCAAATGAAGGAAGACTCGATAGACGG 38455 Query 53371 CATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTAT 53430 ||||| || || ||||| ||||||||| |||| || | | ||||| || ||||| Sbjct 38456 TATCTATGACACTCTCAAACAGTGTGCCCTCATCAGTAAATCTGCCGGTGGCATTGGTAT 38515 Query 53431 CCACTGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGA 53490 | ||| || || | || | | ||| ||| || || |||||| || | Sbjct 38516 CGCCTGTCACAAGATCAGAGCCAGCAGCAGTTATATCCGTGGCACCAACGGCACATCCAA 38575 Query 53491 TGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGG 53550 || || || || ||||| || ||||| || |||| ||| | |||||| |||| || || Sbjct 38576 CGGTATTGTCCCCATGCTTCGTGTCTTTAATGACACTGCCAGATACGTCGACCAAGGCGG 38635 Query 53551 TGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGA 53610 ||| ||| | ||||| | || ||| ||||| | ||||| ||||||||||| ||| | || Sbjct 38636 TGGCAAGAGAAAGGGTGCCTTTGCCGTCTACTTGGAGCCATGGCACGCCGATATTTTTGA 38695 Query 53611 GTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTAC 53670 |||| |||| || ||| || || | || || ||| | | | ||||| ||| Sbjct 38696 GTTTATCGATTTGAAAAAGAACCACGGCAAAGAGGAAATGAGAGCCAGAGACCTCTTTTA 38755 Query 53671 AGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCT 53730 || || ||| | |||||||| ||| ||| || ||| | ||| || |||| ||| Sbjct 38756 CGCCCTCTGGGTCAGTGACCTCTTTATGGAAAGAGTCGAGCAAAACGCCGATTGGTCCCT 38815 Query 53731 GATGTGCCCGAACGA 53745 | || || ||||| Sbjct 38816 CTTTTGTCCCAACGA 38830 Score = 84.2 bits (92), Expect = 2e-11 Identities = 138/199 (69%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 55726 TCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAG 55785 |||||| ||| | ||| || || ||||| |||| || | | || ||||||||| Sbjct 39818 TCTCAAAGAGCTCTACAAAACAGTCTGGGAAATTCGTCAAAGAACCCTCATTGACATGGC 39877 Query 55786 TGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCC 55845 || || |||||||| | || ||||| |||| | || |||| || | | || Sbjct 39878 CGCCGAGCGTGGTGCCTTTATTGACCAAAGCCAGAGCTTCAATGTCTTTATTGCTGAGCC 39937 Query 55846 TTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGG 55905 | | |||| | | ||||||||||||||| ||||| ||||| |||||||| || Sbjct 39938 CACCTTTTCCAAACTCACATCGATGCACTTTTACTCCTGGAAAAAGGGTCTCAAGACCGG 39997 Query 55906 TATGTACTATCTGCGGACC 55924 |||||||||||| || ||| Sbjct 39998 TATGTACTATCTCCGTACC 40016 >seq98 Length=57420 Score = 105 bits (116), Expect = 7e-18 Identities = 185/267 (69%), Gaps = 2/267 (1%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||||||||| | | ||| || ||| ||||| |||||| ||||| ||||| Sbjct 16830 GTGAAAATGTATCTTGGGCTAGCGCAATCTGAACCACCTTGAAGACGAGTACCAAATTGA 16771 Query 117365 CCACTCGGC-TCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGAC 117423 |||| |||| | || || | ||| || | || ||| || |||| |||| || || Sbjct 16770 CCAC-CGGCATATAATAGTGGAATGTTATTTGATCCAACATAGCTTTGTGCCATCTTTAC 16712 Query 117424 AATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCC 117483 ||| ||| | | |||| || |||||||||||||| || || || || || || || || Sbjct 16711 AATTGTAGCATTGAGGGAAGCTTCACCATGGTGATAGGCAGTATGTTCAGCAACATAACC 16652 Query 117484 CGCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCAC 117543 | || ||||| || || || || || || || || |||||| ||| ||||| | | Sbjct 16651 AGACAATTGAGCAACTTTAATTTCAGAGGTTAGCTTTCTCTTGAAGCATGCATACAATAT 16592 Query 117544 CTTGCGCTGACTTGGCTTCAGACCATC 117570 || | || | |||||| |||||||| Sbjct 16591 TTTTCTTTGGCCTGGCTTGAGACCATC 16565 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547207600234400