Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Polysphondylium_20violaceum_20[genbank_20GCA_5F000277445.1_202012- 07-09] 1,228 sequences; 25,723,383 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq1179 132 3e-26 seq79 120 2e-22 seq57 120 2e-22 seq778 98.7 6e-16 >seq1179 Length=2421 Score = 132 bits (146), Expect = 3e-26 Identities = 161/217 (74%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 || ||||| |||||| || ||||||||||| || || || | |||| ||||||| Sbjct 2183 ACTAAATGAAGAGTGGATTCTTTTTGAATGTTGTAGTCAGACAAAGTTCTACCGTCTTCC 2124 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617 | ||||||||| ||||| |||||||| ||||| || || || | || || || ||| || Sbjct 2123 AATTGTTTACCTGCAAAGATTAAACGTTGTTGATCGGGTGGGATACCTTCTTTATCT-TG 2065 Query 34618 ATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTT 34676 | ||| || || ||| || |||||| || || || ||||| | ||| || ||||| Sbjct 2064 AATTTTAGTCTTGACGTTATCAATTGTATCAGAGCCTTCAACTTCAAGGGTGATGGTTTT 2005 Query 34677 ACCGGTTAACGTTTTCACAAAAATCTGCATGTTGATT 34713 ||| ||||| ||||| || ||||| ||||| ||||| Sbjct 2004 ACCAGTTAAGGTTTTAACGAAAATTTGCATTATGATT 1968 Score = 105 bits (116), Expect = 4e-18 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 ||||| || |||||| || |||||||||||||| || || | |||| | ||||| Sbjct 2411 ACCAAGTGAAGAGTGGATTCTTTTTGAATGTTATAGTCAGATAAGGTTCTACCATCTTCC 2352 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617 | ||||||||| ||||| || | | ||||| || || || | || || || ||| || Sbjct 2351 AATTGTTTACCTGCAAAAATAAGTCTTTGTTGATCGGGTGGAATACCTTCTTTATCT-TG 2293 Query 34618 ATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTT 34676 | ||| |||||||| || |||||| || | || ||||| | ||| || ||||| Sbjct 2292 AATTTTAGTTTTAACATTATCAATTGTATCGGAACCTTCAACTTCAAGGGTGATAGTTTT 2233 Query 34677 ACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||| || || || || |||||||| ||||| Sbjct 2232 ACCAGTCAAAGTCTTGACAAAAATTTGCAT 2203 >seq79 Length=61457 Score = 120 bits (132), Expect = 2e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||||||| | | || |||||||||||| ||||||||||||||||| || || Sbjct 10071 CCACCTCTAAGTCTGAGGACTAAATGGAGAGTGGATTCCTTTTGAATGTTATAGTCAGAT 10130 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || ||||||| | |||||||||||| || || | | ||||| || || || Sbjct 10131 AAAGTACGACCGTCTTCTAATTGTTTACCGGCGAAAATGAGTCTTTGTTGATCGGGTGGG 10190 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCTCTCCAC 34658 | || ||||| ||| ||| ||||| |||||| | ||| || || || || || Sbjct 10191 ATACCTTCCTTATCT-TGAATCTTTGTCTTAACGTTTTCAATGGTATCAGAGCCTTCGAC 10249 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||| | ||| || || ||||| || || ||||| || ||||| ||||| Sbjct 10250 TTCAAGGGTAATAGTCTTACCAGTCAAGGTTTTGACGAAAATTTGCAT 10297 Score = 120 bits (132), Expect = 2e-22 Identities = 154/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 |||||||| |||||| || ||||| ||||| || || || | |||| | ||||| Sbjct 11001 ACCAAATGAAGAGTGGATTCTTTTTGGATGTTGTAGTCAGATAAGGTTCTACCATCTTCT 11060 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617 | ||||||||||||||| |||||||| ||||| || || || | || || |||||| || Sbjct 11061 AATTGTTTACCGGCAAAGATTAAACGTTGTTGATCGGGTGGGATACCTTCTTTGTCT-TG 11119 Query 34618 ATCTTTTGT-TTTAACGATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTT 34676 | ||| || |||| | ||| || || || || ||||| | ||| || ||||| Sbjct 11120 AATTTTAGTCTTTACATTTTCAATAGTATCAGAGCCTTCGACTTCAAGGGTGATGGTTTT 11179 Query 34677 ACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || ||||| ||||| |||||||| ||||| Sbjct 11180 GCCAGTTAAAGTTTTAACAAAAATTTGCAT 11209 Score = 116 bits (128), Expect = 2e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| || | | || ||||||||||| || ||||| ||||| ||||| || Sbjct 10299 CCACCTCTGAGTCTGAGGACTAAATGGAGAGTAGATTCTTTTTGGATGTTGTAATCAGAT 10358 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || | ||||| | ||| ||||| ||||| |||||||| ||||| || || || Sbjct 10359 AAAGTACGACCATCTTCCAATTGCTTACCAGCAAAGATTAAACGTTGTTGATCGGGTGGA 10418 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCAC 34658 | || || |||||| ||| ||| |||||||| | ||| |||||| | || || Sbjct 10419 ATACCTTCTTTGTCT-TGAATTTTAGTTTTAACATTTTCAATGGTGTCTGAACCTTCGAC 10477 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||| | || || |||||||| || || ||||| || ||||| ||||| Sbjct 10478 TTCAAGAGTAATGGTTTTACCAGTCAAGGTTTTGACGAAAATTTGCAT 10525 Score = 116 bits (128), Expect = 2e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||||||| | | || ||||| ||||| || ||||| ||||| || || || Sbjct 10755 CCACCTCTAAGTCTGAGGACTAAATGAAGAGTAGATTCTTTTTGGATGTTGTAGTCAGAT 10814 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | |||| | ||||| | ||||||||||||||| |||||||| ||||| || || || Sbjct 10815 AAAGTTCTACCATCTTCTAATTGTTTACCGGCAAAAATTAAACGTTGTTGATCGGGTGGG 10874 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCTCTCCAC 34658 | || || |||||| |||| || || |||||| | ||| |||||| | || || Sbjct 10875 ATACCTTCTTTGTCTTGGATC-TTGGTCTTAACGTTTTCAATGGTGTCTGAACCTTCGAC 10933 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||| | || || || ||||| || || ||||| || ||||| ||||| Sbjct 10934 TTCAAGAGTAATAGTCTTACCAGTCAAGGTTTTGACGAAAATTTGCAT 10981 Score = 98.7 bits (108), Expect = 6e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| || | | || ||||||||||| || ||||| ||||| || || || Sbjct 10527 CCACCTCTGAGTCTGAGAACTAAATGGAGAGTAGATTCTTTTTGGATGTTGTAGTCAGAT 10586 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || ||||||| | |||||||||||| || || | | ||||| || || || Sbjct 10587 AAAGTACGACCGTCTTCTAATTGTTTACCGGCGAAAATGAGTCTTTGTTGATCGGGTGGG 10646 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGT-TTTAACGATAAAATTGTGTCTTCGCTCTCCAC 34658 | || || |||||| ||| ||| || |||| | ||| || || || || || Sbjct 10647 ATACCTTCTTTGTCT-TGAATTTTAGTCTTTACATTTTCAATAGTATCAGAGCCTTCAAC 10705 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||| | ||| || |||||||| ||||| ||||| || ||||| ||||| Sbjct 10706 TTCAAGGGTGATGGTTTTACCAGTTAAAGTTTTGACGAAAATTTGCAT 10753 >seq57 Length=71319 Score = 120 bits (132), Expect = 2e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| || | | || ||||||||||| |||||||| ||||| || || || Sbjct 43416 CCACCTCTGAGTCTAAGAACTAAATGGAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAT 43475 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || | || || | ||||||||| ||||| |||||||| ||||| || || || Sbjct 43476 AAAGTACGACCATCCTCCAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCGGGTGGG 43535 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCAC 34658 | || || |||||| ||| ||| |||||||| | ||| |||||| || || || Sbjct 43536 ATACCTTCTTTGTCT-TGAATTTTAGTTTTAACATTTTCAATGGTGTCTGAGCCTTCTAC 43594 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||| | || || |||||||| || | ||||| |||||||| ||||| Sbjct 43595 TTCAAGAGTAATGGTTTTACCAGTGAGAGTTTTAACAAAAATTTGCAT 43642 Score = 116 bits (128), Expect = 2e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||||||| | | || ||||| |||||| || ||||| ||||| ||||| || Sbjct 43872 CCACCTCTAAGTCTAAGAACTAAATGAAGAGTGGATTCTTTTTGGATGTTGTAATCAGAT 43931 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | |||| | ||||| | |||||||||||| || |||||||| ||||| || || || Sbjct 43932 AAAGTTCTACCATCTTCTAATTGTTTACCGGCGAAAATTAAACGTTGTTGATCGGGTGGA 43991 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCTCTCCAC 34658 | || || |||||| ||| || || || ||| | ||| |||||| || || || Sbjct 43992 ATACCTTCTTTGTCT-TGAATCTTGGTCTTGACGTTTTCAATAGTGTCTGAGCCTTCGAC 44050 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||| | || || |||||||| || || || || || ||||| ||||| Sbjct 44051 TTCAAGAGTAATGGTTTTACCAGTCAAGGTCTTGACGAAAATTTGCAT 44098 Score = 89.7 bits (98), Expect = 3e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||||||| | | || ||||||||||| || ||||| || || ||||| || Sbjct 43188 CCACCTCTAAGTCTAAGAACTAAATGGAGAGTAGATTCTTTTTGGATATTGTAATCAGAC 43247 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || | ||||| | |||||||||||| || |||||||| ||||| || || || Sbjct 43248 AAGGTACGTCCATCTTCTAATTGTTTACCGGCGAAAATTAAACGTTGTTGATCGGGTGGG 43307 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCAC 34658 | || ||||| ||| ||| || || || || | || || || | || || Sbjct 43308 ATACCTTCCTTATCT-TGAATCTTGGTCTTGACATTTTCGATGGTATCAGAACCTTCGAC 43366 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||| | ||| || || ||||| || || || || || ||||| ||||| Sbjct 43367 TTCGAGGGTAATGGTCTTACCAGTCAAGGTCTTAACGAAAATTTGCAT 43414 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| || | | || |||||||| || || ||||| |||||||| || || Sbjct 43644 CCACCTCTGAGTCTGAGGACTAAATGGAGGGTAGATTCTTTTTGGATGTTATAGTCAGAT 43703 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || ||||||| | |||||||||||| || || | | ||||| || || || Sbjct 43704 AAAGTACGACCGTCTTCTAATTGTTTACCGGCGAAAATAAGTCTTTGTTGATCGGGTGGA 43763 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCTCTCCAC 34658 | || || |||||| ||| || ||||||||| | ||| || || | || || Sbjct 43764 ATACCTTCTTTGTCT-TGAATCTTGGTTTTAACGTTTTCAATGGTATCAGAACCTTCAAC 43822 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||| | || || || ||||| || || || || || ||||| ||||| Sbjct 43823 TTCAAGAGTAATGGTCTTACCAGTCAAGGTCTTAACGAAAATTTGCAT 43870 >seq778 Length=8042 Score = 98.7 bits (108), Expect = 6e-16 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||||||| | | || || ||||| || || ||||| ||||| || || || Sbjct 4692 CCACCTCTAAGTCTGAGAACTAAGTGGAGGGTTGATTCTTTTTGGATGTTGTAGTCAGAT 4751 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | |||| | ||||| | ||||||||||||||| |||||||| ||||| || || || Sbjct 4752 AAAGTTCTACCATCTTCTAATTGTTTACCGGCAAAGATTAAACGTTGTTGATCGGGTGGG 4811 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCTCTCCAC 34658 | || || |||||| |||| || | || ||| | || ||||| | || || Sbjct 4812 ATACCTTCTTTGTCTTGGATC-TTGGCCTTGACGTTTTCGATGGTGTCAGAACCTTCGAC 4870 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709 ||| | || || || ||||| ||||| ||||| || || || |||||||| Sbjct 4871 TTCGAGAGTGATGGTCTTACCAGTTAAGGTTTTAACGAAGATTTGCATGTT 4921 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314724889678124