Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Polysphondylium_20violaceum_20[genbank_20GCA_5F000277445.1_202012- 07-09] 1,228 sequences; 25,723,383 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq57 158 1e-33 seq79 152 4e-32 seq1179 136 3e-27 seq778 129 5e-25 seq298 104 2e-17 >seq57 Length=71319 Score = 158 bits (174), Expect = 1e-33 Identities = 161/210 (77%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| |||||||| || || || | |||||||||||||| ||| || Sbjct 43642 ATGCAAATTTTTGTTAAAACTCTCACTGGTAAAACCATTACTCTTGAAGTAGAAGGCTCA 43583 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || ||| |||||||||||||||||||| || |||||||||||| Sbjct 43582 GACACCATTGAAAATGTTAAAACTAAAATTCAAGACAAAGAAGGTATCCCACCCGATCAA 43523 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || |||||||| | || || ||||||||||| || || || | || || |||||| Sbjct 43522 CAACGTTTAATCTTTGCTGGTAAACAATTGGAGGATGGTCGTACTTTATCTGACTACAAC 43463 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTT 27197 || |||||||| || || | ||||| ||| Sbjct 43462 ATCCAAAAGGAATCTACTCTCCATTTAGTT 43433 Score = 149 bits (164), Expect = 5e-31 Identities = 159/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || |||| || || | |||||||||||||| ||| || Sbjct 44098 ATGCAAATTTTCGTCAAGACCTTGACTGGTAAAACCATTACTCTTGAAGTCGAAGGCTCA 44039 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | ||||| || ||||||||||||||||| || |||||||||||| Sbjct 44038 GACACTATTGAAAACGTCAAGACCAAGATTCAAGACAAAGAAGGTATTCCACCCGATCAA 43979 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || |||||||| | |||||| |||||||| ||||| || || | || ||||||||| Sbjct 43978 CAACGTTTAATTTTCGCCGGTAAACAATTAGAAGATGGTAGAACTTTATCTGATTACAAC 43919 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTT 27197 || ||||| || || || | ||||| ||| Sbjct 43918 ATCCAAAAAGAATCCACTCTTCATTTAGTT 43889 Score = 131 bits (144), Expect = 1e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || |||| || || | ||||| |||||||| ||| || Sbjct 43186 ATGCAAATTTTCGTCAAGACCTTGACTGGTAAAACCATTACCCTTGAAGTCGAAGGCTCT 43127 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | ||||| || ||||||||||||||||| || |||||||||||| Sbjct 43126 GATACCATCGAAAACGTCAAGACCAAGATTCAAGACAAAGAAGGTATTCCACCCGATCAA 43067 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || |||||||| | || || |||||||| |||||| || || | || || || ||| Sbjct 43066 CAACGTTTAATTTTTGCTGGTAAACAATTAGAAGACGGTCGTACTTTATCTGACTATAAC 43007 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTT 27197 || |||||||| || ||| | ||||| ||| Sbjct 43006 ATCCAAAAGGAATCTACCCTCCATTTAGTT 42977 Score = 129 bits (142), Expect = 5e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || |||| || ||| | |||||||||||||| ||| || Sbjct 43870 ATGCAAATTTTCGTTAAGACCTTGACTGGTAAGACCATTACTCTTGAAGTTGAAGGTTCT 43811 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | || ||| || ||||||||||||||||| || |||||||||||| Sbjct 43810 GATACCATTGAAAACGTTAAAACCAAGATTCAAGACAAAGAAGGTATTCCACCCGATCAA 43751 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | | || | |||||| |||||||| |||||| || || | || || || ||| Sbjct 43750 CAAAGACTTATTTTCGCCGGTAAACAATTAGAAGACGGTCGTACTTTATCTGACTATAAC 43691 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGT 27196 || ||||| || || ||| | ||||| || Sbjct 43690 ATCCAAAAAGAATCTACCCTCCATTTAGT 43662 Score = 122 bits (134), Expect = 8e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || |||| || ||| | ||||| || ||||| ||| || Sbjct 43414 ATGCAAATTTTCGTTAAGACCTTGACTGGTAAGACCATTACCCTCGAAGTCGAAGGTTCT 43355 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | ||||| || |||||||| || ||||| || |||||||||||| Sbjct 43354 GATACCATCGAAAATGTCAAGACCAAGATTCAAGATAAGGAAGGTATCCCACCCGATCAA 43295 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || |||||||| | |||||| |||||||| ||||| | ||| | || |||||||| Sbjct 43294 CAACGTTTAATTTTCGCCGGTAAACAATTAGAAGATGGACGTACCTTGTCTGATTACAAT 43235 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTT 27197 || ||||| || || || | ||||| ||| Sbjct 43234 ATCCAAAAAGAATCTACTCTCCATTTAGTT 43205 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| |||||||| || || || | ||||| |||||||| ||| || Sbjct 44326 ATGCAAATTTTTGTTAAAACTCTCACTGGTAAAACCATTACCCTTGAAGTCGAAGGTTCT 44267 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | ||||| || |||||||| || ||||| || |||||||||||| Sbjct 44266 GATACCATCGAAAATGTCAAGACCAAGATTCAAGATAAGGAAGGTATCCCACCCGATCAA 44207 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | | || | || || |||||||| ||||| || || | || || ||||| Sbjct 44206 CAAAGACTTATTTTTGCTGGTAAACAATTAGAAGATGGTAGAACTTTATCTGACTACAAT 44147 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGT 27196 |||||||| || || || | ||||| || Sbjct 44146 ATTCAAAAAGAATCCACTCTTCATTTAGT 44118 >seq79 Length=61457 Score = 152 bits (168), Expect = 4e-32 Identities = 167/222 (75%), Gaps = 4/222 (2%) Strand=Plus/Minus Query 26975 TAATTTATACGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGA 27034 ||||||||| ||||| || ||||| |||||| | || ||||| | || || ||||| Sbjct 11218 TAATTTATA----ATGCAAATTTTTGTTAAAACTTTAACTGGCAAAACCATCACCCTTGA 11163 Query 27035 AGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCAT 27094 ||| ||| || || | ||||| | || || |||||||||||||||||||| || Sbjct 11162 AGTCGAAGGCTCTGATACTATTGAAAATGTAAAGACTAAAATTCAAGACAAAGAAGGTAT 11103 Query 27095 ACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGT 27154 |||||||||||||| |||||||| | ||||| |||||||| ||||| || ||| | Sbjct 11102 CCCACCCGATCAACAACGTTTAATCTTTGCCGGTAAACAATTAGAAGATGGTAGAACCTT 11043 Query 27155 TTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGT 27196 || || |||||||| ||||| || || || | |||||||| Sbjct 11042 ATCTGACTACAACATCCAAAAAGAATCCACTCTTCATTTGGT 11001 Score = 147 bits (162), Expect = 2e-30 Identities = 158/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || ||||| |||| || || | |||||||||||||| ||| || Sbjct 10525 ATGCAAATTTTCGTCAAAACCTTGACTGGTAAAACCATTACTCTTGAAGTCGAAGGTTCA 10466 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || ||| |||||||||||||||||||| || |||||||||||| Sbjct 10465 GACACCATTGAAAATGTTAAAACTAAAATTCAAGACAAAGAAGGTATTCCACCCGATCAA 10406 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || |||||||| | || || || ||||||||||| || || | || ||||||||| Sbjct 10405 CAACGTTTAATCTTTGCTGGTAAGCAATTGGAAGATGGTCGTACTTTATCTGATTACAAC 10346 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGT 27196 || ||||| || || || | ||||| || Sbjct 10345 ATCCAAAAAGAATCTACTCTCCATTTAGT 10317 Score = 143 bits (158), Expect = 2e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || ||||| |||| || ||| |||||||||||||||| ||| || Sbjct 10981 ATGCAAATTTTCGTCAAAACCTTGACTGGTAAGACTATTACTCTTGAAGTCGAAGGTTCA 10922 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || || || || |||||||||||||| || |||||||||||| Sbjct 10921 GACACCATTGAAAACGTTAAGACCAAGATCCAAGACAAAGAAGGTATCCCACCCGATCAA 10862 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || |||||||| | ||||| |||||||| ||||| || || | || || |||||| Sbjct 10861 CAACGTTTAATTTTTGCCGGTAAACAATTAGAAGATGGTAGAACTTTATCTGACTACAAC 10802 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGT 27196 || ||||| || || || | ||||| || Sbjct 10801 ATCCAAAAAGAATCTACTCTTCATTTAGT 10773 Score = 129 bits (142), Expect = 5e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || ||||| |||| || ||| ||||||| |||||||| ||| || Sbjct 10297 ATGCAAATTTTCGTCAAAACCTTGACTGGTAAGACTATTACCCTTGAAGTCGAAGGCTCT 10238 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | || || ||| |||||||| || ||||| || |||||||||||| Sbjct 10237 GATACCATTGAAAACGTTAAGACAAAGATTCAAGATAAGGAAGGTATCCCACCCGATCAA 10178 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | | || | |||||| |||||||| |||||| || || | || || || ||| Sbjct 10177 CAAAGACTCATTTTCGCCGGTAAACAATTAGAAGACGGTCGTACTTTATCTGACTATAAC 10118 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGT 27196 ||||||||||| || || | ||||| || Sbjct 10117 ATTCAAAAGGAATCCACTCTCCATTTAGT 10089 Score = 122 bits (134), Expect = 8e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || |||||| | || || || | || || |||||||| ||| || Sbjct 10753 ATGCAAATTTTCGTCAAAACTTTAACTGGTAAAACCATCACCCTTGAAGTTGAAGGCTCT 10694 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | || || |||||||||||||||||||| || |||||||||||| Sbjct 10693 GATACTATTGAAAATGTAAAGACTAAAATTCAAGACAAAGAAGGTATCCCACCCGATCAA 10634 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | | || | |||||| |||||||| |||||| || || | || || |||||| Sbjct 10633 CAAAGACTCATTTTCGCCGGTAAACAATTAGAAGACGGTCGTACTTTATCTGACTACAAC 10574 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTT 27197 || ||||| || || || | ||||| ||| Sbjct 10573 ATCCAAAAAGAATCTACTCTCCATTTAGTT 10544 >seq1179 Length=2421 Score = 136 bits (150), Expect = 3e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || ||||| | || || || | || || |||||||| ||| || Sbjct 1975 ATGCAAATTTTCGTTAAAACCTTAACTGGTAAAACCATCACCCTTGAAGTTGAAGGCTCT 2034 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | ||||| ||||||||||| |||||||| || |||||||||||| Sbjct 2035 GATACAATTGATAACGTCAAGACTAAAATTCAAGATAAAGAAGGTATCCCACCCGATCAA 2094 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || |||||||| | || || ||||||||||||||| || || | || || |||||| Sbjct 2095 CAACGTTTAATCTTTGCAGGTAAACAATTGGAAGACGGTAGAACTTTGTCTGACTACAAC 2154 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTT 27197 |||||||| || || || | ||||| ||| Sbjct 2155 ATTCAAAAAGAATCCACTCTTCATTTAGTT 2184 Score = 129 bits (142), Expect = 5e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || ||| |||| || || |||| || |||||||| ||| ||| Sbjct 2203 ATGCAAATTTTTGTCAAGACTTTGACTGGTAAAACTATCACCCTTGAAGTTGAAGGTTCC 2262 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | || ||| ||||||||||| |||||||| || |||||||||||| Sbjct 2263 GATACAATTGATAATGTTAAAACTAAAATTCAAGATAAAGAAGGTATTCCACCCGATCAA 2322 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | | || | || || |||||||||||||| || ||| | || || || ||| Sbjct 2323 CAAAGACTTATTTTTGCAGGTAAACAATTGGAAGATGGTAGAACCTTATCTGACTATAAC 2382 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGT 27196 |||||||| || || || | || ||||| Sbjct 2383 ATTCAAAAAGAATCCACTCTTCACTTGGT 2411 >seq778 Length=8042 Score = 129 bits (142), Expect = 5e-25 Identities = 155/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| || || || ||||| | || || ||| | || ||||| ||||| ||| || Sbjct 4919 CATGCAAATCTTCGTTAAAACCTTAACTGGTAAGACCATCACTCTCGAAGTCGAAGGTTC 4860 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | || || | ||||| || || |||||||||||||| || ||||||||||| Sbjct 4859 TGACACCATCGAAAACGTCAAGGCCAAGATCCAAGACAAAGAAGGTATCCCACCCGATCA 4800 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| |||||||| | ||||| |||||||| ||||| || || | || || ||||| Sbjct 4799 ACAACGTTTAATCTTTGCCGGTAAACAATTAGAAGATGGTAGAACTTTATCTGACTACAA 4740 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTT 27197 ||| ||||| || || ||| | || || ||| Sbjct 4739 CATCCAAAAAGAATCAACCCTCCACTTAGTT 4709 >seq298 Length=27992 Score = 104 bits (114), Expect = 2e-17 Identities = 128/175 (73%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 27022 CTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAG 27081 ||||||| || ||||| ||| ||||| | || || | ||||| ||||| |||| Sbjct 13367 CTATTACCCTCGAAGTTGAAGGTTCCGATACCATCGAAAATGTCAAGGCTAAAATCCAAG 13308 Query 27082 ACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAG 27141 |||||||||| || || ||||||||||| | | || | || || |||||||| |||| Sbjct 13307 ACAAAGAAGGTATCCCCCCCGATCAACAAAGACTTATCTTTGCTGGTAAACAATTAGAAG 13248 Query 27142 ACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGT 27196 || || || | |||||||||||||| ||||| || || ||| | || || || Sbjct 13247 ACGGTCGTACTTTATCCGATTACAACATCCAAAAAGAATCTACCCTTCACTTAGT 13193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434911724002560