Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Polysphondylium_20violaceum_20[genbank_20GCA_5F000277445.1_202012- 07-09] 1,228 sequences; 25,723,383 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq79 116 3e-21 seq57 111 1e-19 seq1179 96.9 2e-15 >seq79 Length=61457 Score = 116 bits (128), Expect = 3e-21 Identities = 156/215 (73%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 27786 TAAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAG 27845 || ||||||||||||||| |||||| | ||||| ||| || || |||| |||||| | Sbjct 11213 TATAATGCAAATTTTTGTTAAAACTTTAACTGGCAAAACCATCACCCTTGAAGTCGAAGG 11154 Query 27846 CACCGA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATG 27903 | | || | || | ||| || || ||||| |||||||||||| | || Sbjct 11153 CTCTGATACTATTGAAAAT--GTAAAGACTAAAATTCAAGACAAAGAAGGTATCCCACCC 11096 Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGAT 27963 || || ||||| ||||| |||||||| |||||||| || || | | | ||| || || Sbjct 11095 GATCAACAACGTTTAATCTTTGCCGGTAAACAATTAGAAGATGGTAGAACCTTATCTGAC 11036 Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGT 27998 ||||||||||||||||| |||| | |||||||| Sbjct 11035 TACAACATCCAAAAAGAATCCACTCTTCATTTGGT 11001 Score = 105 bits (116), Expect = 5e-18 Identities = 151/211 (72%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||||||||| || ||||| | ||||| ||| ||||| |||| |||||| | | Sbjct 10525 ATGCAAATTTTCGTCAAAACCTTGACTGGTAAAACCATTACTCTTGAAGTCGAAGGTTCA 10466 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || | ||| || ||| ||||| |||||||||||| |||| || | Sbjct 10465 GACACCATTGAAAAT--GTTAAAACTAAAATTCAAGACAAAGAAGGTATTCCACCCGATC 10408 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | ||||| ||||| ||||| || || |||||||| || | || | || || ||||||| Sbjct 10407 AACAACGTTTAATCTTTGCTGGTAAGCAATTGGAAGATGGTCGTACTTTATCTGATTACA 10348 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGT 27998 ||||||||||||| ||| | ||||| || Sbjct 10347 ACATCCAAAAAGAATCTACTCTCCATTTAGT 10317 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/212 (70%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||||||||| || |||||| | ||||| ||| || || |||| || ||| || | Sbjct 10753 ATGCAAATTTTCGTCAAAACTTTAACTGGTAAAACCATCACCCTTGAAGTTGAAGGCTCT 10694 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || | ||| || || ||||| |||||||||||| | || || | Sbjct 10693 GATACTATTGAAAAT--GTAAAGACTAAAATTCAAGACAAAGAAGGTATCCCACCCGATC 10636 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | ||| | | ||||| ||||| |||||||| || |||| || | || || || |||| Sbjct 10635 AACAAAGACTCATTTTCGCCGGTAAACAATTAGAAGACGGTCGTACTTTATCTGACTACA 10576 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTT 27999 ||||||||||||| ||| | ||||| ||| Sbjct 10575 ACATCCAAAAAGAATCTACTCTCCATTTAGTT 10544 >seq57 Length=71319 Score = 111 bits (122), Expect = 1e-19 Identities = 153/212 (72%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||||||||| |||||||| ||||| ||| ||||| |||| || ||| || | Sbjct 43642 ATGCAAATTTTTGTTAAAACTCTCACTGGTAAAACCATTACTCTTGAAGTAGAAGGCTCA 43583 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || | ||| || ||| ||||| |||||||||||| | || || | Sbjct 43582 GACACCATTGAAAAT--GTTAAAACTAAAATTCAAGACAAAGAAGGTATCCCACCCGATC 43525 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | ||||| ||||| ||||| || ||||||||||| || | || | || || || |||| Sbjct 43524 AACAACGTTTAATCTTTGCTGGTAAACAATTGGAGGATGGTCGTACTTTATCTGACTACA 43465 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTT 27999 |||||||||| || ||| | ||||| ||| Sbjct 43464 ACATCCAAAAGGAATCTACTCTCCATTTAGTT 43433 Score = 109 bits (120), Expect = 4e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||||||||| || || || | ||||| ||| ||||| |||| |||||| || | Sbjct 44098 ATGCAAATTTTCGTCAAGACCTTGACTGGTAAAACCATTACTCTTGAAGTCGAAGGCTCA 44039 Query 27850 GACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAG 27909 ||| | | || ||||| || || |||||||||||| |||| || || Sbjct 44038 GACACTATTGAAAACGTCAAGACCAAGATTCAAGACAAAGAAGGTATTCCACCCGATCAA 43979 Query 27910 CAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAAC 27969 ||||| |||||||| ||||| |||||||| || || | | | || || ||||||||| Sbjct 43978 CAACGTTTAATTTTCGCCGGTAAACAATTAGAAGATGGTAGAACTTTATCTGATTACAAC 43919 Query 27970 ATCCAAAAAGAGAGCACTTTGCATTTGGTT 27999 ||||||||||| |||| | ||||| ||| Sbjct 43918 ATCCAAAAAGAATCCACTCTTCATTTAGTT 43889 Score = 93.3 bits (102), Expect = 3e-14 Identities = 138/196 (70%), Gaps = 10/196 (5%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||||||||| || || || | ||||| ||| ||||| |||| |||||| || | Sbjct 43186 ATGCAAATTTTCGTCAAGACCTTGACTGGTAAAACCATTACCCTTGAAGTCGAAGGCTCT 43127 Query 27850 GACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 || ||| |||| ||||| || || |||||||||||| |||| | Sbjct 43126 GA-----TACCATCGAAAACGTCAAGACCAAGATTCAAGACAAAGAAGGTATTCCACCCG 43072 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | || ||||| ||||||||||| || |||||||| || |||| || | || || || | Sbjct 43071 ATCAACAACGTTTAATTTTTGCTGGTAAACAATTAGAAGACGGTCGTACTTTATCTGACT 43012 Query 27965 ACAACATCCAAAAAGA 27980 | ||||||||||| || Sbjct 43011 ATAACATCCAAAAGGA 42996 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/212 (70%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||||||||| || || || | ||||| || ||||| | || |||||| | | Sbjct 43414 ATGCAAATTTTCGTTAAGACCTTGACTGGTAAGACCATTACCCTCGAAGTCGAAGGTTCT 43355 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || | ||| ||||| || || || || |||||| | || || | Sbjct 43354 GATACCATCGAAAAT--GTCAAGACCAAGATTCAAGATAAGGAAGGTATCCCACCCGATC 43297 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | ||||| |||||||| ||||| |||||||| || || | ||| | |||||| ||||||| Sbjct 43296 AACAACGTTTAATTTTCGCCGGTAAACAATTAGAAGATGGACGTACCTTGTCTGATTACA 43237 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTT 27999 | ||||||||||| ||| | ||||| ||| Sbjct 43236 ATATCCAAAAAGAATCTACTCTCCATTTAGTT 43205 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/225 (69%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 27778 CACAATAGTAAA--ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTG 27835 ||| |||||| | |||||||||||||| |||||||| ||||| ||| ||||| ||| Sbjct 44340 CACTATAGTACATTATGCAAATTTTTGTTAAAACTCTCACTGGTAAAACCATTACCCTTG 44281 Query 27836 ATGTCGAAAGCACCG--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGG 27893 | |||||| | | | || || | ||| ||||| || || || || ||||| Sbjct 44280 AAGTCGAAGGTTCTGATACCATCGAAAAT--GTCAAGACCAAGATTCAAGATAAGGAAGG 44223 Query 27894 TGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAG 27953 | | || || || ||| | | |||||||| || |||||||| || || | | | Sbjct 44222 TATCCCACCCGATCAACAAAGACTTATTTTTGCTGGTAAACAATTAGAAGATGGTAGAAC 44163 Query 27954 CTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGT 27998 || || || ||||| || |||||||| |||| | ||||| || Sbjct 44162 TTTATCTGACTACAATATTCAAAAAGAATCCACTCTTCATTTAGT 44118 >seq1179 Length=2421 Score = 96.9 bits (106), Expect = 2e-15 Identities = 151/216 (70%), Gaps = 10/216 (5%) Strand=Plus/Plus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||||||||| || ||||| | ||||| ||| || || |||| || ||| || | Sbjct 1974 AATGCAAATTTTCGTTAAAACCTTAACTGGTAAAACCATCACCCTTGAAGTTGAAGGCTC 2033 Query 27849 CGACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATG 27903 || |||||| | ||||| ||||| || ||||||||| | || Sbjct 2034 TGA-----TACAATTGATAACGTCAAGACTAAAATTCAAGATAAAGAAGGTATCCCACCC 2088 Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGAT 27963 || || ||||| ||||| ||||| || ||||||||||| |||| | | ||||| || Sbjct 2089 GATCAACAACGTTTAATCTTTGCAGGTAAACAATTGGAAGACGGTAGAACTTTGTCTGAC 2148 Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTT 27999 |||||||| |||||||| |||| | ||||| ||| Sbjct 2149 TACAACATTCAAAAAGAATCCACTCTTCATTTAGTT 2184 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||||||||| || ||| | ||||| ||| ||| || |||| || ||| | || Sbjct 2203 ATGCAAATTTTTGTCAAGACTTTGACTGGTAAAACTATCACCCTTGAAGTTGAAGGTTCC 2262 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || | ||| || ||| ||||| || ||||||||| |||| || | Sbjct 2263 GATACAATTGATAAT--GTTAAAACTAAAATTCAAGATAAAGAAGGTATTCCACCCGATC 2320 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | ||| | | |||||||| || ||||||||||| || | | | ||| || || || | Sbjct 2321 AACAAAGACTTATTTTTGCAGGTAAACAATTGGAAGATGGTAGAACCTTATCTGACTATA 2380 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGT 27998 |||| |||||||| |||| | || ||||| Sbjct 2381 ACATTCAAAAAGAATCCACTCTTCACTTGGT 2411 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355857074074356