Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Polysphondylium_20violaceum_20[genbank_20GCA_5F000277445.1_202012- 07-09] 1,228 sequences; 25,723,383 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq778 147 5e-30 seq1179 141 2e-28 seq57 138 3e-27 seq79 134 3e-26 seq298 120 7e-22 >seq778 Length=8042 Score = 147 bits (162), Expect = 5e-30 Identities = 167/224 (75%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 210896 AAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCT 210955 |||||| || || | ||| || || || |||||||||||||| || || | | || || Sbjct 4700 AAGTCTGAGAACTAAGTGGAGGGTTGATTCTTTTTGGATGTTGTAGTCAGATAAAGTTCT 4759 Query 210956 TCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTC 211015 |||||||| | || || || || ||||| | |||||||| || || || | ||||| Sbjct 4760 ACCATCTTCTAATTGTTTACCGGCAAAGATTAAACGTTGTTGATCGGGTGGGATACCTTC 4819 Query 211016 CTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGT 211075 ||||| |||||||| || |||||||||||||||||||| | ||| || |||||||| Sbjct 4820 TTTGTCTTGGATCTTGGCCTTGACGTTTTCGATGGTGTCAGAACCTTCGACTTCGAGAGT 4879 Query 211076 GATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTTAT 211119 ||| ||||| || || | || || || || | ||||| |||| Sbjct 4880 GATGGTCTTACCAGTTAAGGTTTTAACGAAGATTTGCATGTTAT 4923 >seq1179 Length=2421 Score = 141 bits (156), Expect = 2e-28 Identities = 162/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 210897 AGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTT 210956 ||||| || || | |||||||||||| |||||||| |||||||| || | | ||| || Sbjct 2420 AGTCTAAGTACCAAGTGAAGAGTGGATTCTTTTTGAATGTTATAGTCAGATAAGGTTCTA 2361 Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016 |||||||||| || || ||||| || ||||| | |||||| || || |||| ||||| Sbjct 2360 CCATCTTCCAATTGTTTACCTGCAAAAATAAGTCTTTGTTGATCGGGTGGAATACCTTCT 2301 Query 211017 TTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTG 211076 || || || || || ||| || || || || || || || | |||||| || || ||| Sbjct 2300 TTATCTTGAATTTTAGTTTTAACATTATCAATTGTATCGGAACCTTCAACTTCAAGGGTG 2241 Query 211077 ATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || || | |||||| ||||| | ||||| Sbjct 2240 ATAGTTTTACCAGTCAAAGTCTTGACAAAAATTTGCAT 2203 Score = 116 bits (128), Expect = 9e-21 Identities = 158/218 (72%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||| || || | ||||||||||| |||||||| ||||| || || | | || || || Sbjct 2190 TCTGAGAACTAAATGAAGAGTGGATTCTTTTTGAATGTTGTAGTCAGACAAAGTTCTACC 2131 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 ||||||| || || ||||| ||||| | |||||||| || || || | ||||| || Sbjct 2130 GTCTTCCAATTGTTTACCTGCAAAGATTAAACGTTGTTGATCGGGTGGGATACCTTCTTT 2071 Query 211019 GTCCTGGATCTTTTGT-TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGA 211077 || || || ||| || || ||||| || || || ||||||| |||||| || || |||| Sbjct 2070 ATCTTGAAT-TTTAGTCTTGACGTTATCAATTGTATCAGAGCCTTCAACTTCAAGGGTGA 2012 Query 211078 TCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 | || || || || | || || || || | |||||| Sbjct 2011 TGGTTTTACCAGTTAAGGTTTTAACGAAAATTTGCATT 1974 >seq57 Length=71319 Score = 138 bits (152), Expect = 3e-27 Identities = 162/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 210896 AAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCT 210955 |||||| || || | ||||||||||| |||||||||||||| ||||| | | || || Sbjct 43880 AAGTCTAAGAACTAAATGAAGAGTGGATTCTTTTTGGATGTTGTAATCAGATAAAGTTCT 43939 Query 210956 TCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTC 211015 |||||||| | || || || ||||| || | |||||||| || || |||| ||||| Sbjct 43940 ACCATCTTCTAATTGTTTACCGGCGAAAATTAAACGTTGTTGATCGGGTGGAATACCTTC 43999 Query 211016 CTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGT 211075 ||||| || ||||| || |||||||| || ||||| |||| ||| || || ||||| Sbjct 44000 TTTGTCTTGAATCTTGGTCTTGACGTTTTCAATAGTGTCTGAGCCTTCGACTTCAAGAGT 44059 Query 211076 GATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || || | ||||| || || | ||||| Sbjct 44060 AATGGTTTTACCAGTCAAGGTCTTGACGAAAATTTGCAT 44098 Score = 136 bits (150), Expect = 9e-27 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 210897 AGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTT 210956 ||||| ||||| | || || || || ||||||||||||||||| || | | || | Sbjct 43653 AGTCTGAGGACTAAATGGAGGGTAGATTCTTTTTGGATGTTATAGTCAGATAAAGTACGA 43712 Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016 || ||||| | || || || ||||| ||||| | |||||| || || |||| ||||| Sbjct 43713 CCGTCTTCTAATTGTTTACCGGCGAAAATAAGTCTTTGTTGATCGGGTGGAATACCTTCT 43772 Query 211017 TTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTG 211076 ||||| || ||||| ||| |||||||| ||||| ||||| | |||||| || ||||| Sbjct 43773 TTGTCTTGAATCTTGGTTTTAACGTTTTCAATGGTATCAGAACCTTCAACTTCAAGAGTA 43832 Query 211077 ATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| || || | ||||| || || | ||||| Sbjct 43833 ATGGTCTTACCAGTCAAGGTCTTAACGAAAATTTGCAT 43870 Score = 132 bits (146), Expect = 1e-25 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 210897 AGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTT 210956 ||||| ||||| | ||||||||||| |||||||| || || || || | | || || Sbjct 44109 AGTCTGAGGACTAAATGAAGAGTGGATTCTTTTTGAATATTGTAGTCAGATAAAGTTCTA 44168 Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016 |||||||| | || || || || || ||||| | |||||| || || || | |||||| Sbjct 44169 CCATCTTCTAATTGTTTACCAGCAAAAATAAGTCTTTGTTGATCGGGTGGGATACCTTCC 44228 Query 211017 TTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTG 211076 || || || ||||| || || ||||||||||| ||||| | ||| || || || || Sbjct 44229 TTATCTTGAATCTTGGTCTTGACATTTTCGATGGTATCAGAACCTTCGACTTCAAGGGTA 44288 Query 211077 ATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || |||||||| || ||||| | ||||| Sbjct 44289 ATGGTTTTACCAGTGAGAGTTTTAACAAAAATTTGCAT 44326 Score = 129 bits (142), Expect = 1e-24 Identities = 160/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 210896 AAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCT 210955 |||||| || || | || ||||| || ||||||||||| || ||||| | | ||| | Sbjct 43196 AAGTCTAAGAACTAAATGGAGAGTAGATTCTTTTTGGATATTGTAATCAGACAAGGTACG 43255 Query 210956 TCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTC 211015 ||||||||| | || || || ||||| || | |||||||| || || || | ||||| Sbjct 43256 TCCATCTTCTAATTGTTTACCGGCGAAAATTAAACGTTGTTGATCGGGTGGGATACCTTC 43315 Query 211016 CTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGT 211075 ||| || || ||||| || || ||||||||||| ||||| | ||| || ||||| || Sbjct 43316 CTTATCTTGAATCTTGGTCTTGACATTTTCGATGGTATCAGAACCTTCGACTTCGAGGGT 43375 Query 211076 GATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| || || | ||||| || || | ||||| Sbjct 43376 AATGGTCTTACCAGTCAAGGTCTTAACGAAAATTTGCAT 43414 Score = 123 bits (136), Expect = 6e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 210897 AGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTT 210956 ||||| || || | || ||||| || || ||||||||||| || || | | || | Sbjct 43425 AGTCTAAGAACTAAATGGAGAGTAGATTCCTTTTGGATGTTGTAGTCAGATAAAGTACGA 43484 Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016 ||||| |||| || || || || ||||| | |||||||| || || || | ||||| Sbjct 43485 CCATCCTCCAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCGGGTGGGATACCTTCT 43544 Query 211017 TTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTG 211076 ||||| || || || ||| || ||||| |||||||| |||| ||| || || ||||| Sbjct 43545 TTGTCTTGAATTTTAGTTTTAACATTTTCAATGGTGTCTGAGCCTTCTACTTCAAGAGTA 43604 Query 211077 ATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || |||||||| || ||||| | ||||| Sbjct 43605 ATGGTTTTACCAGTGAGAGTTTTAACAAAAATTTGCAT 43642 Score = 109 bits (120), Expect = 1e-18 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 210897 AGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTT 210956 ||||| || || | || || || || || |||||||||||||| || | | || | Sbjct 42969 AGTCTGAGAACTAAATGGAGGGTAGATTCCTTTTGGATGTTATAGTCAGATAAAGTACGA 43028 Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016 || ||||| | || || || || || || | |||||||| || || |||| ||||| Sbjct 43029 CCGTCTTCTAATTGTTTACCAGCAAAAATTAAACGTTGTTGATCGGGTGGAATACCTTCT 43088 Query 211017 TTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTG 211076 ||||| || ||||| || |||||||||||||| ||||||| ||| || || || || Sbjct 43089 TTGTCTTGAATCTTGGTCTTGACGTTTTCGATGGTATCAGAGCCTTCGACTTCAAGGGTA 43148 Query 211077 ATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || || | ||||| || || | ||||| Sbjct 43149 ATGGTTTTACCAGTCAAGGTCTTGACGAAAATTTGCAT 43186 >seq79 Length=61457 Score = 134 bits (148), Expect = 3e-26 Identities = 164/221 (74%), Gaps = 2/221 (1%) Strand=Plus/Plus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||| ||||| | ||||||||||| |||||||||||||| || || | | ||| || || Sbjct 10994 TCTAAGGACCAAATGAAGAGTGGATTCTTTTTGGATGTTGTAGTCAGATAAGGTTCTACC 11053 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 |||||| | || || || || ||||| | |||||||| || || || | ||||| || Sbjct 11054 ATCTTCTAATTGTTTACCGGCAAAGATTAAACGTTGTTGATCGGGTGGGATACCTTCTTT 11113 Query 211019 GTCCTGGATCTTTTGT-TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGA 211077 ||| || || ||| || || || ||||| || || ||||||| ||| || || || |||| Sbjct 11114 GTCTTGAAT-TTTAGTCTTTACATTTTCAATAGTATCAGAGCCTTCGACTTCAAGGGTGA 11172 Query 211078 TCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTTA 211118 | || || || || | ||| || ||||| | |||||| || Sbjct 11173 TGGTTTTGCCAGTTAAAGTTTTAACAAAAATTTGCATTATA 11213 Score = 129 bits (142), Expect = 1e-24 Identities = 160/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 210896 AAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCT 210955 |||||| ||||| | |||||||| || |||||||||||||| || || | | || || Sbjct 10763 AAGTCTGAGGACTAAATGAAGAGTAGATTCTTTTTGGATGTTGTAGTCAGATAAAGTTCT 10822 Query 210956 TCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTC 211015 |||||||| | || || || || || || | |||||||| || || || | ||||| Sbjct 10823 ACCATCTTCTAATTGTTTACCGGCAAAAATTAAACGTTGTTGATCGGGTGGGATACCTTC 10882 Query 211016 CTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGT 211075 ||||| |||||||| || |||||||| |||||||| || | ||| || || ||||| Sbjct 10883 TTTGTCTTGGATCTTGGTCTTAACGTTTTCAATGGTGTCTGAACCTTCGACTTCAAGAGT 10942 Query 211076 GATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| || || | || || || || | ||||| Sbjct 10943 AATAGTCTTACCAGTCAAGGTTTTGACGAAAATTTGCAT 10981 Score = 127 bits (140), Expect = 5e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 210897 AGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTT 210956 ||||| ||||| | || ||||| || |||||||||||||| ||||| | | || | Sbjct 10308 AGTCTGAGGACTAAATGGAGAGTAGATTCTTTTTGGATGTTGTAATCAGATAAAGTACGA 10367 Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016 |||||||||| ||||| || || ||||| | |||||||| || || |||| ||||| Sbjct 10368 CCATCTTCCAATTGCTTACCAGCAAAGATTAAACGTTGTTGATCGGGTGGAATACCTTCT 10427 Query 211017 TTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTG 211076 ||||| || || || ||| || ||||| |||||||| || | ||| || || ||||| Sbjct 10428 TTGTCTTGAATTTTAGTTTTAACATTTTCAATGGTGTCTGAACCTTCGACTTCAAGAGTA 10487 Query 211077 ATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || || | || || || || | ||||| Sbjct 10488 ATGGTTTTACCAGTCAAGGTTTTGACGAAAATTTGCAT 10525 Score = 109 bits (120), Expect = 1e-18 Identities = 157/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 210897 AGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTT 210956 ||||| || || | || ||||| || |||||||||||||| || || | | || | Sbjct 10536 AGTCTGAGAACTAAATGGAGAGTAGATTCTTTTTGGATGTTGTAGTCAGATAAAGTACGA 10595 Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016 || ||||| | || || || ||||| || || | |||||| || || || | ||||| Sbjct 10596 CCGTCTTCTAATTGTTTACCGGCGAAAATGAGTCTTTGTTGATCGGGTGGGATACCTTCT 10655 Query 211017 TTGTCCTGGATCTTTTGT-TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGT 211075 ||||| || || ||| || || || ||||| || || ||||||| |||||| || || || Sbjct 10656 TTGTCTTGAAT-TTTAGTCTTTACATTTTCAATAGTATCAGAGCCTTCAACTTCAAGGGT 10714 Query 211076 GATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||| || || || || | ||| || || || | ||||| Sbjct 10715 GATGGTTTTACCAGTTAAAGTTTTGACGAAAATTTGCAT 10753 >seq298 Length=27992 Score = 120 bits (132), Expect = 7e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 210897 AGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTT 210956 ||||| ||||| | |||||| || || |||||||||||||| ||||| | | || | Sbjct 13184 AGTCTGAGGACTAAGTGAAGGGTAGATTCTTTTTGGATGTTGTAATCGGATAAAGTACGA 13243 Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016 || ||||| | || || || || |||||||| | |||||| || || || | ||||| Sbjct 13244 CCGTCTTCTAATTGTTTACCAGCAAAGATAAGTCTTTGTTGATCGGGGGGGATACCTTCT 13303 Query 211017 TTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTG 211076 ||||| ||||| || || || ||||||||||| || || | |||||| ||||| || Sbjct 13304 TTGTCTTGGATTTTAGCCTTGACATTTTCGATGGTATCGGAACCTTCAACTTCGAGGGTA 13363 Query 211077 ATCGTCTTTCC 211087 || || || || Sbjct 13364 ATAGTTTTACC 13374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159133762192220