Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Polysphondylium_20violaceum_20[genbank_20GCA_5F000277445.1_202012- 07-09] 1,228 sequences; 25,723,383 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq57 158 8e-34 seq79 156 3e-33 seq1179 154 1e-32 seq778 129 4e-25 seq298 95.1 8e-15 >seq57 Length=71319 Score = 158 bits (174), Expect = 8e-34 Identities = 163/211 (77%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| ||||| |||||||| ||||| || ||||| || ||||| ||||| || | | Sbjct 43642 ATGCAAATTTTTGTTAAAACTCTCACTGGTAAAACCATTACTCTTGAAGTAGAAGGCTCA 43583 Query 23671 GACACTGTTGAAA-TATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||||| | ||||||| |||| || |||||||||||| | || || ||||| Sbjct 43582 GACACCATTGAAAATGTTAAAACTAAAA-TTCAAGACAAAGAAGGTATCCCACCCGATCA 43524 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| |||||||| ||||| || |||||| |||| || | || |||||| || ||||| Sbjct 43523 ACAACGTTTAATCTTTGCTGGTAAACAATTGGAGGATGGTCGTACTTTATCTGACTACAA 43464 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820 ||| ||||| || || || | ||||||||| Sbjct 43463 CATCCAAAAGGAATCTACTCTCCATTTAGTT 43433 Score = 145 bits (160), Expect = 5e-30 Identities = 158/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| |||||||| || ||| | || || ||||| || ||||| ||||| || | | Sbjct 44098 ATGCAAATTTTCGTCAAGACCTTGACTGGTAAAACCATTACTCTTGAAGTCGAAGGCTCA 44039 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| |||||| | || || ||| |||||||||||| | || || |||||| Sbjct 44038 GACACTATTGAAAACGTCAAGACCAAGATTCAAGACAAAGAAGGTATTCCACCCGATCAA 43979 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || |||||||| || ||||| |||||| | ||||| | | |||||| ||||||||| Sbjct 43978 CAACGTTTAATTTTCGCCGGTAAACAATTAGAAGATGGTAGAACTTTATCTGATTACAAC 43919 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTT 23820 || |||||||| ||||| | ||||||||| Sbjct 43918 ATCCAAAAAGAATCCACTCTTCATTTAGTT 43889 Score = 120 bits (132), Expect = 2e-22 Identities = 154/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| ||||||||||| ||| | || || || || || ||||| |||||||| | Sbjct 43870 ATGCAAATTTTCGTTAAGACCTTGACTGGTAAGACCATTACTCTTGAAGTTGAAGGTTCT 43811 Query 23671 GACACTGTTGAAATA-TTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||||| ||||||| || | || |||||||||||| | || || ||||| Sbjct 43810 GATACCATTGAAAACGTTAAAACCAAGA-TTCAAGACAAAGAAGGTATTCCACCCGATCA 43752 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || || ||||| |||||| | ||||||| || |||||| || || || Sbjct 43751 ACAAAGACTTATTTTCGCCGGTAAACAATTAGAAGACGGTCGTACTTTATCTGACTATAA 43692 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGT 23819 ||| |||||||| || || | |||||||| Sbjct 43691 CATCCAAAAAGAATCTACCCTCCATTTAGT 43662 Score = 118 bits (130), Expect = 7e-22 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| |||||||| || ||| | || || ||||| || || || ||||| || | | Sbjct 43186 ATGCAAATTTTCGTCAAGACCTTGACTGGTAAAACCATTACCCTTGAAGTCGAAGGCTCT 43127 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || | |||| | || || ||| |||||||||||| | || || |||||| Sbjct 43126 GATACCATCGAAAACGTCAAGACCAAGATTCAAGACAAAGAAGGTATTCCACCCGATCAA 43067 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || |||||||| ||||| || |||||| | ||||||| || |||||| || || ||| Sbjct 43066 CAACGTTTAATTTTTGCTGGTAAACAATTAGAAGACGGTCGTACTTTATCTGACTATAAC 43007 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTT 23820 || ||||| || || || | ||||||||| Sbjct 43006 ATCCAAAAGGAATCTACCCTCCATTTAGTT 42977 Score = 113 bits (124), Expect = 3e-20 Identities = 153/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| ||||||||||| ||| | || || || || || || |||||||| || | Sbjct 43414 ATGCAAATTTTCGTTAAGACCTTGACTGGTAAGACCATTACCCTCGAAGTCGAAGGTTCT 43355 Query 23671 GACACTGTTG-AAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || | | |||| | || || || ||| || || |||||| | || || ||||| Sbjct 43354 GATACCATCGAAAATGTCAAGAC-CAAGATTCAAGATAAGGAAGGTATCCCACCCGATCA 43296 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| |||||||| || ||||| |||||| | ||||| | ||| || || |||||||| Sbjct 43295 ACAACGTTTAATTTTCGCCGGTAAACAATTAGAAGATGGACGTACCTTGTCTGATTACAA 43236 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820 || |||||||| || || | ||||||||| Sbjct 43235 TATCCAAAAAGAATCTACTCTCCATTTAGTT 43205 >seq79 Length=61457 Score = 156 bits (172), Expect = 3e-33 Identities = 162/210 (77%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| |||||||| |||||| | || || ||||| || ||||| ||||| || | Sbjct 10525 ATGCAAATTTTCGTCAAAACCTTGACTGGTAAAACCATTACTCTTGAAGTCGAAGGTTCA 10466 Query 23671 GACACTGTTGAAA-TATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||||| | ||||||| |||| || |||||||||||| | || || ||||| Sbjct 10465 GACACCATTGAAAATGTTAAAACTAAAA-TTCAAGACAAAGAAGGTATTCCACCCGATCA 10407 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| |||||||| ||||| || || ||| ||||||| | || |||||| |||||||| Sbjct 10406 ACAACGTTTAATCTTTGCTGGTAAGCAATTGGAAGATGGTCGTACTTTATCTGATTACAA 10347 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGT 23819 ||| |||||||| || || | |||||||| Sbjct 10346 CATCCAAAAAGAATCTACTCTCCATTTAGT 10317 Score = 143 bits (158), Expect = 2e-29 Identities = 171/232 (74%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 23606 TTAAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACT 23665 ||| |||||| ||||| |||||||| | || || ||||| ||||| || ||||| || Sbjct 11214 TTATAATGCAAATTTTTGTTAAAACTTTAACTGGCAAAACCATCACCCTTGAAGTCGAAG 11155 Query 23666 CCACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAG 23725 | | || ||| |||||| |||| |||||| |||||||||||| | || || | Sbjct 11154 GCTCTGATACTATTGAAAATGTAAAGACTAAAATTCAAGACAAAGAAGGTATCCCACCCG 11095 Query 23726 ATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATT 23785 ||||||| |||||||| |||||||| |||||| | ||||| | | || ||| || | Sbjct 11094 ATCAACAACGTTTAATCTTTGCCGGTAAACAATTAGAAGATGGTAGAACCTTATCTGACT 11035 Query 23786 ACAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||||||| |||||||| ||||| | ||||| || | || || |||| || Sbjct 11034 ACAACATCCAAAAAGAATCCACTCTTCATTTGGTCCTTAGATTAAGAGGTGG 10983 Score = 136 bits (150), Expect = 3e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| |||||||| ||||| | || || ||||| ||||| || |||||||| | | Sbjct 10753 ATGCAAATTTTCGTCAAAACTTTAACTGGTAAAACCATCACCCTTGAAGTTGAAGGCTCT 10694 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || ||| |||||| |||| |||||| |||||||||||| | || || |||||| Sbjct 10693 GATACTATTGAAAATGTAAAGACTAAAATTCAAGACAAAGAAGGTATCCCACCCGATCAA 10634 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || | | || || ||||| |||||| | ||||||| || |||||| || |||||| Sbjct 10633 CAAAGACTCATTTTCGCCGGTAAACAATTAGAAGACGGTCGTACTTTATCTGACTACAAC 10574 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTT 23820 || |||||||| || || | ||||||||| Sbjct 10573 ATCCAAAAAGAATCTACTCTCCATTTAGTT 10544 Score = 129 bits (142), Expect = 4e-25 Identities = 156/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| |||||||| |||||| | || || || || || ||||| ||||| || | Sbjct 10981 ATGCAAATTTTCGTCAAAACCTTGACTGGTAAGACTATTACTCTTGAAGTCGAAGGTTCA 10922 Query 23671 GACACTGTTGAAATA-TTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||||| |||| || || | | |||||||||||| | || || ||||| Sbjct 10921 GACACCATTGAAAACGTTAAGACCAAGA-TCCAAGACAAAGAAGGTATCCCACCCGATCA 10863 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| |||||||| |||||||| |||||| | ||||| | | |||||| || ||||| Sbjct 10862 ACAACGTTTAATTTTTGCCGGTAAACAATTAGAAGATGGTAGAACTTTATCTGACTACAA 10803 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGT 23819 ||| |||||||| || || | |||||||| Sbjct 10802 CATCCAAAAAGAATCTACTCTTCATTTAGT 10773 >seq1179 Length=2421 Score = 154 bits (170), Expect = 1e-32 Identities = 173/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| ||||||||||||||| | || || ||||| ||||| || |||||||| | | Sbjct 1974 AATGCAAATTTTCGTTAAAACCTTAACTGGTAAAACCATCACCCTTGAAGTTGAAGGCTC 2033 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 || || |||| || | || || |||||| || ||||||||| | || || |||| Sbjct 2034 TGATACAATTGATAACGTCAAGAC-TAAAATTCAAGATAAAGAAGGTATCCCACCCGATC 2092 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 |||| |||||||| ||||| || |||||| ||||||||| | ||||| || |||| Sbjct 2093 AACAACGTTTAATCTTTGCAGGTAAACAATTGGAAGACGGTAGAACTTTGTCTGACTACA 2152 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 |||| |||||||| ||||| | ||||||||| | || || |||| || Sbjct 2153 ACATTCAAAAAGAATCCACTCTTCATTTAGTTCTCAGATTAAGAGGTGG 2201 >seq778 Length=8042 Score = 129 bits (142), Expect = 4e-25 Identities = 157/214 (73%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 23607 TAAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTC 23666 ||| ||||| || |||||||||||| | || || || || |||||||||||||| || Sbjct 4922 TAACATGCAAATCTTCGTTAAAACCTTAACTGGTAAGACCATCACTCTCGAAGTCGAAGG 4863 Query 23667 CACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| | |||| | || || || |||||||||||| | || || || Sbjct 4862 TTCTGACACCATCGAAAACGTCAAGGCCAAGATCCAAGACAAAGAAGGTATCCCACCCGA 4803 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 |||||| |||||||| |||||||| |||||| | ||||| | | |||||| || || Sbjct 4802 TCAACAACGTTTAATCTTTGCCGGTAAACAATTAGAAGATGGTAGAACTTTATCTGACTA 4743 Query 23787 CAACATACAAAAAGAGTCCACATTACATTTAGTT 23820 |||||| |||||||| || || | || |||||| Sbjct 4742 CAACATCCAAAAAGAATCAACCCTCCACTTAGTT 4709 >seq298 Length=27992 Score = 95.1 bits (104), Expect = 8e-15 Identities = 130/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 23638 GGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGAAATATTAAAACAAAAA 23697 || ||||| || || ||||||||||| | || || | |||| | || ||| Sbjct 13374 GGTAAAACTATTACCCTCGAAGTTGAAGGTTCCGATACCATCGAAAATGTCAAGGCTAAA 13315 Query 23698 ATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAA 23757 || |||||||||||| | || || |||||||| | | || ||||| || |||||| Sbjct 13314 ATCCAAGACAAAGAAGGTATCCCCCCCGATCAACAAAGACTTATCTTTGCTGGTAAACAA 13255 Query 23758 CTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACATTTA 23817 | ||||||| || |||||| |||||||||||| |||||||| || || | || ||| Sbjct 13254 TTAGAAGACGGTCGTACTTTATCCGATTACAACATCCAAAAAGAATCTACCCTTCACTTA 13195 Query 23818 GT 23819 || Sbjct 13194 GT 13193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338004541263824