Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Polysphondylium_20violaceum_20[genbank_20GCA_5F000277445.1_202012- 07-09] 1,228 sequences; 25,723,383 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq697 255 5e-63 >seq697 Length=10231 Score = 255 bits (282), Expect = 5e-63 Identities = 566/836 (68%), Gaps = 20/836 (2%) Strand=Plus/Minus Query 4280 TTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCCATAAAATCAAACGGATTAGT 4339 |||||| || || ||||| | || | ||||| ||||||| ||||||| ||||| | Sbjct 6213 TTCGAAAAAGTTTGTTTTTCTTTGGAGGGAAATCATTTCCATCCAATCAAATGGATTGGG 6154 Query 4340 TGCGTTGTA-ATGTTTTTCACACTTTAGAGCTACAAGCAATCGGTCAGCTACAAATTCTA 4398 |||||||| || ||||| | | || | | |||| ||| || |||||| | Sbjct 6153 AGCGTTGTAGATCTTTTTGTAGCCGAGGGTGTAGA-GTAATCTGTCGGCACAAAATTCAA 6095 Query 4399 TATACTGGCTCATGAGTTCGC-AGTTAATTCCAATTAATCTCACAGGTAGCGCGTATGTC 4457 | ||||| |||| | ||| |||| || ||||| || || || || || Sbjct 6094 TGTACTGTGACATG-GAACGCGAGTTCATACCAATCAAGTCGACGGGAAGACTGTCACAG 6036 Query 4458 AAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCTTTTATTTTATCTTTAGAT 4517 | |||||||| ||| | ||||| ||| |||| || || || | ||| || Sbjct 6035 ACAAACTCTTTTTCGCAGGCAACGGCGTCTCTGATGATGGTTTCGATGGT--CTTGGCAT 5978 Query 4518 GG--TTTATTTACTAAGTATCCAAACAATAAACACGCAAAATCACAATGCAAACCTTCGT 4575 | ||| || || || | |||| ||||| ||||| | || || | ||| |||| Sbjct 5977 CGAGTTTGTTGACCAACTTGGAGTACAACAAACAGGCAAAGTTGCAGTGGAGACCCTCGT 5918 Query 4576 CTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTAAGCC 4635 | | || || || |||||||| || || || |||||||| ||||| | || || |||| Sbjct 5917 CACGACTGATGAGCTCGTTAGAGAATGTCAAACCGGGCATCAAACCACGTTTCTTGAGCC 5858 Query 4636 AAAATATAGCGGCAAA--TGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCTAC 4693 |||| |||| | ||| || | | ||||| ||| || || ||||||||||| || || Sbjct 5857 AAAAGATAGAGCAAAAACTGCCGCTGAAAAAGATA--CCCTCGACGGCGGCAAAGGCAAC 5800 Query 4694 TAATCGGGACCCGAACGAGCTGGCTTTGTCTTTAATCCATTTTAATGCCCAGTTAGCTTT 4753 ||| || | || || || ||| | |||||| | |||||||||| || || Sbjct 5799 TAAACGTTCGGCAAATGATTTG---CTGTTGGTGATCCATCTCAATGCCCAGTCGGCCTT 5743 Query 4754 TTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATAATTTACTTTTTTCAAATGGGTC 4813 || || || || || || || | || ||||| |||| ||| || ||||| | ||| Sbjct 5742 CTTTTTCACACAGGGGATGGTCTCGATGGCGTTGAATAGTTTGCTCTTTTCCACGCTGTC 5683 Query 4814 TTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCAAT 4873 ||| || || ||||| || | || || || | || ||||| || ||||| || ||||| Sbjct 5682 TTGGATGTAGGTGTCGATCAAGAGACTGTAGGTCTCTGAATGGATGTTTTCAATGGCAAT 5623 Query 4874 CTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTTTCTAC 4933 || || || || || |||||||| |||| | ||||||||| | || || |||| | Sbjct 5622 TTGGAAGCCATAGAAACATCTAGCCTCTGGAATTTGAACTTCACT-CATAAACTTTGTGG 5564 Query 4934 TAAG-TTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATATAA 4992 ||| ||||| || || ||||| |||||||| || ||||| |||||||||| ||||| | Sbjct 5563 CAAGATTTTCATTGACAATACCATCACTGGCAGCGAAAAAGGCCAAAACATTGGATATGA 5504 Query 4993 AGTACTGTTCGTCAGGCTTAAGT---TTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAA 5049 | || |||||| | || | | || ||||| | | | |||| | ||||||| Sbjct 5503 AATAACGTTCGTTATCATTTAATTTCTTGTTCCAATCGTTGAGATCTGGTGCCAAATCAA 5444 Query 5050 CTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGACCAAATATCA 5105 |||||| | |||||||| ||||| |||| ||||||||| ||| |||||| Sbjct 5443 TTTCTTCGGCTGTCCAAAAACTGGCTTCAGCTTGTTTGTACATCTTCCATATATCA 5388 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427043208668924