Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Polysphondylium_20violaceum_20[genbank_20GCA_5F000277445.1_202012- 07-09] 1,228 sequences; 25,723,383 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq697 237 2e-57 seq2 170 3e-37 >seq697 Length=10231 Score = 237 bits (262), Expect = 2e-57 Identities = 416/597 (70%), Gaps = 13/597 (2%) Strand=Plus/Minus Query 48138 AAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTG 48197 ||||| ||||| | || || ||||| || || | ||| || | |||||||| ||||| Sbjct 5948 AAACAGGCAAAGTTGCAGTGGAGACCCTCGTCACGACTGATGAGCTCGTTAGAGAATGTC 5889 Query 48198 AGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAA-AA 48256 | ||||||||| | |||||||| ||||||||||| || | || ||| | | | || Sbjct 5888 AAACCGGGCATCAAACCACGTTTCTTGAGCCAAAAGATAGA-GCAAAAACTGCCGCTGAA 5830 Query 48257 GAATATGCCTTCTACGGCCGCAAATGCGG-TAAGTCTCTCTCCGTAACTGGCTTC--GTT 48313 || || || || ||||| ||||| || ||| | || | || || || ||| Sbjct 5829 AAAGATACCCTCGACGGCGGCAAAGGCAACTAAACGT---TCGGCAAATGATTTGCTGTT 5773 Query 48314 GTGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGC 48373 | ||||| | |||||| || |||||||| || ||||| || || || || || || Sbjct 5772 GGTGATCCATCTCAATGCCCAGTCGGCCTTCTTTTTCACACAGGGGATGGTCTCGATGGC 5713 Query 48374 ATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATA 48433 || || || | | ||||| ||| |||| | ||| || || || || ||||| || Sbjct 5712 GTTGAATAGTTTGCTCTTTTCCACGCTGTCTTGGATGTAGGTGTCGATCAAGAGACTGTA 5653 Query 48434 CATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGT 48493 | || || || || |||||||| || || || || || || |||||||| || |||| Sbjct 5652 GGTCTCTGAATGGATGTTTTCAATGGCAATTTGGAAGCCATAGAAACATCTAGCCTCTGG 5593 Query 48494 GATCTGTACCTCCGTACAAAATCGTTCAGCCAA-ATTCTCATTTACTATTCCATCACTAG 48552 || || || || | || || | || | ||| ||| ||||| || || |||||||| | Sbjct 5592 AATTTGAACTTCACT-CATAAACTTTGTGGCAAGATTTTCATTGACAATACCATCACTGG 5534 Query 48553 CAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATT-- 48610 |||| ||||| || || |||| || ||||| |||||| | | | ||| || Sbjct 5533 CAGCGAAAAAGGCCAAAACATTGGATATGAAATAACGTTCGTTATCATTTAATTTCTTGT 5474 Query 48611 -CCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTG 48669 ||| || |||| |||| || | ||| | |||||| ||||||||||| || || | Sbjct 5473 TCCAATCGTTGAGATCTGGTGCCAAATCAATTTCTTCGGCTGTCCAAAAACTGGCTTCAG 5414 Query 48670 CTTTTTTATACATATTCCATATATCACTGTATTGGATTGGGAAAATAACAAATCTAT 48726 ||| ||| ||||| |||||||||||| ||| || ||||||||| | |||||||||| Sbjct 5413 CTTGTTTGTACATCTTCCATATATCATTGTGTTTGATTGGGAATAACACAAATCTAT 5357 >seq2 Length=160969 Score = 170 bits (188), Expect = 3e-37 Identities = 1021/1630 (63%), Gaps = 53/1630 (3%) Strand=Plus/Minus Query 76803 GCGGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAA 76862 || ||| | ||||| |||||||||||||| || || |||||| |||| ||| || Sbjct 40024 GCTGGTCTGGTACGGAGATAGTACATACCGGTCTTGAGACCCTTTTTCCAGGAGTAAAAG 39965 Query 76863 TGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATATTCATCGACTGACTT 76922 ||||| ||| ||||||||| | | || || || ||| | ||| | ||| ||| Sbjct 39964 TGCATCGATGTGAGTTTGGAAAAGGTGGGCTCAGCAATAAAGACATTGAAGCTCTGGCTT 39905 Query 76923 TGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCC 76982 || || || || || || | || || ||||| | || | ||| ||||| |||||||| Sbjct 39904 TGGTCAATAAAGGCACCACGCTCGGCGGCCATGTCAATGAGGGTTCTTTGACGAATTTCC 39845 Query 76983 CAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAAGGTTT-----GTATTTTGAATGG 77037 || | |||||| | | | ||||| ||| || || | ||| ||| ||| || Sbjct 39844 CAGACTGTTTTGTAGAGCTCTTTGAGATCGTCGGG--GATTTCCTCAATATCTTGGAT-- 39789 Query 77038 AACCACCATCTG----ATATAATTGTATTCTTTATATCATCATTCCACAATTTCCTCTCT 77093 || || |||| || ||| ||||| || || ||| | ||| Sbjct 39788 -ACTGCC-TCTGTGGAGAATGATTTGGTTCTTGATCTCTGGCGACCATAGACCAAGCTCC 39731 Query 77094 GTTAAAACTCTAAGGAGATGAGGATTAACTATTTGAAATTCTCCAGACAATACTCTACGA 77153 | | | | | ||||| || ||| || || ||||| || | ||| || | |||| Sbjct 39730 ATGAGATCGGTGAGGAGTTGTTTATTTACAATGGTGAATTCACCGGCCAACACACGACGA 39671 Query 77154 GTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTA 77213 ||||||| || || ||||| || | | ||||||||||| | |||||||| || Sbjct 39670 CTGTAAATGTTGGATGTGTATGGCTCAAAGCACTCATTGTTTCCGAGAATTTGAGAGGTG 39611 Query 77214 GAAGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTC-TGATTTT 77272 || |||||||| || || | ||| | ||| ||||| ||||| ||| | |||| || Sbjct 39610 CTGGCGGTTGGCATTGGGGCAATCAAAAGACTGTTTCTAAGACC-GGTGGCCTTGATCTT 39552 Query 77273 ATCTTTTAGATATTTCCAATCCCAAAGATCTGAAGGTACAACATCCCAAAGATCGTATTG 77332 || || || | ||| |||||| | || || ||| |||| | || ||||| Sbjct 39551 TTCCTTGAGTTTGGCCCAGTCCCAACGTGGAGATGGAGTGACACCCCACATGTCATATTG 39492 Query 77333 TAGAATTCCGTTACTAGCATATGATCCATTATATGTTTCATAAGGTCCTTCTGTTTCAGC 77392 || || || ||| || ||| || | | | |||||||| | || | | |||| Sbjct 39491 GAGGATACCCTTAGAGGCTGGTGAGCCTTCAAAGGTTTCATAGGCACCGTGGGCAGCAGC 39432 Query 77393 TAGTTCACAACTCGCTTCCAATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAG 77452 | ||| | ||| | || | |||| || |||||| ||||| |||||| Sbjct 39431 CAACTCATTAGAGGCTGTGAGAGCGGCAAAATAGATGGTTTCGGCAATCTCACGATTGAG 39372 Query 77453 ATCTTG-TGCTTCAATACTATCAAACGGATAATGTAAAAGAATAAAGGCATCTGCTAATC 77511 | | | || || || ||||| || || | | |||||| |||| || | | Sbjct 39371 -TGTGGCAGCGCCAGTAGAGTCAAAAGGTAAACGAAGGGCGATAAAGACATCGGCGAGAC 39313 Query 77512 CCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAG 77571 | || | |||| |||||| ||||| |||||| | ||||| | || | ||| || | | Sbjct 39312 CTTGGATGCCAAGACCAATGGGTCTGTGTCTCATGTTGGACACCTTTGATTCGGGCACTG 39253 Query 77572 GATAATAATTAATGTCTATAATTTTATTGAGATTTCTAACAACTACTTTAACCACGTCCT 77631 |||| || || |||| || || || |||||||| | | ||| || || || | Sbjct 39252 GATAGTAGTTTCTGTCAATGATCTTGTTGAGATTCTTGGTGATTACCTTGGTTACCTCAT 39193 Query 77632 TTAGTTTAAGAAAATCAAAT--CTT-------------------CCATCT------ATAA 77664 || | || ||| || ||| || | | | || Sbjct 39192 AGAGATGTTGATGGTCATATTCCTTTTCTTTGGGGTTGGTGGAACCTTGTTTTTGGACAA 39133 Query 77665 CAAACATGTTCAAAGCTATAGATGCTAGATTACAAACTGCTACCTCAT-TAGCGTTGGCA 77723 || | || |||||| ||||| || | ||| ||||| || || || | | ||| || Sbjct 39132 CATATTTGGGCAAAGCAATAGAGGCCAAATTGCAAACGGCCACTTCCTCTGGCG-AGGTG 39074 Query 77724 TATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTG 77783 ||||| | || || || || || || || | || ||||| || |||||||| ||| Sbjct 39073 TATTGGACGATTTCTGTGCAAAGGTTGCTGCTGGAAATGGTGCCAAGGTTTTGTTGATTG 39014 Query 77784 CTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGAT 77843 ||| |||||| | || || || || || || || || || ||||| || || | | Sbjct 39013 GATTTTGAATTGCAGGCATCTTTGTAGAGGATGAATGGGGTACCAGTTTCGATTTGGGCT 38954 Query 77844 TCGATAATAGATTTCCAGACGACTCTAGCTTTTATCATAGATTTG----TATCGCCTCTC 77899 |||| ||| | ||||| | || ||||| |||| | ||| ||| | | Sbjct 38953 TCGAGAATGGCAAACCAGAGGTCTTGGGCTTTGATCACACGCTTGGCAAGATCTGGTGTG 38894 Query 77900 TCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGG 77959 | ||| ||||| ||| || | ||| || || | || |||| ||||| Sbjct 38893 GC-TTCGTATTGGAGATAGAGTTTTCTAAACTCTTCGCTATGGCACTCGGCCAAGCCAGG 38835 Query 77960 GCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAG 78019 | ||| || || || | | ||||| || | | || || |||| || ||||||||| Sbjct 38834 GGCTTCGTTGGGACAAAAGAGGGACCAATCGGCGTTTTGCTCGACTCTTTCCATAAAGAG 38775 Query 78020 ATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATT 78079 ||| | ||| || || ||| || |||| || ||| ||| || || || || Sbjct 38774 GTCACTGACCCAGAGGGCGTAAAAGAGGTCTCTGGCTCTCATTTCCTCTTTGCCGTGGTT 38715 Query 78080 CTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCCAT 78139 |||||| | ||||| |||||| | |||||| | |||||||| || | || | || | Sbjct 38714 CTTTTTCAAATCGATAAACTCAAAAATATCGGCGTGCCATGGCTCCAAGTAGACGGCAAA 38655 Query 78140 AACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCT 78199 | || || || ||| || || || | |||||||| |||| |||| | || | Sbjct 38654 GGCACCCTTTCTCTTGCCACCGCCTTGGTCGACGTATCTGGCAGTGTCATTAAAGACACG 38595 Query 78200 CAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGC 78259 | ||| || | ||||||||| ||||| || || || ||| |||||||| | || || Sbjct 38594 AAGCATGGGGACAATACCGTTGGATGTGCCGTTGGTGCCACGGATATAACTGCTGCTGGC 38535 Query 78260 GCGAATATTACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACG 78319 | || || | || || || || || || || ||| || || || || | Sbjct 38534 TCTGATCTTGTGACAGGCGATACCAATGCCACCGGCAGATTTACTGATGAGGGCACACTG 38475 Query 78320 TTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCT 78379 ||| | || || |||||||| ||||| ||| ||| |||| | | || ||||| || Sbjct 38474 TTTGAGAGTGTCATAGATACCGTCTATCGAGTCTTCCTTCATTTGCACGAGGAAACAACT 38415 Query 78380 AGACATTTGA 78389 ||||| ||| Sbjct 38414 TGACATCTGA 38405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694658136833920