Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Polysphondylium_20violaceum_20[genbank_20GCA_5F000277445.1_202012- 07-09] 1,228 sequences; 25,723,383 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq697 188 1e-42 seq2 143 4e-29 >seq697 Length=10231 Score = 188 bits (208), Expect = 1e-42 Identities = 405/596 (68%), Gaps = 11/596 (2%) Strand=Plus/Minus Query 46627 AAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTG 46686 ||||| ||||| | || || || || || || | ||| || | |||||||| ||||| Sbjct 5948 AAACAGGCAAAGTTGCAGTGGAGACCCTCGTCACGACTGATGAGCTCGTTAGAGAATGTC 5889 Query 46687 AGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAA-AA 46745 | || ||||| | ||||| || ||||||||||| |||| || ||| | | | || Sbjct 5888 AAACCGGGCATCAAACCACGTTTCTTGAGCCAAAAGATAGA-GCAAAAACTGCCGCTGAA 5830 Query 46746 GAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTA--ACTGGCATCATTA 46803 || || || || || || || || || || | | || | | | | || | | Sbjct 5829 AAAGATACCCTCGACGGCGGCAAAGGCAACTAAACGTTCGGCAAATGATTTGC-TGTTGG 5771 Query 46804 TGAATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCA 46863 ||| |||| || ||||| || ||||| || || ||||| || || || || || || Sbjct 5770 TGA-TCCATCTCAATGCCCAGTCGGCCTTCTTTTTCACACAGGGGATGGTCTCGATGGCG 5712 Query 46864 TTAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATAC 46923 || || || | | ||||| | || |||| | || || || || || ||||| || Sbjct 5711 TTGAATAGTTTGCTCTTTTCCACGCTGTCTTGGATGTAGGTGTCGATCAAGAGACTGTAG 5652 Query 46924 ATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTA 46983 | |||||||| ||||||||||| || || || || || || |||||||| || || | | Sbjct 5651 GTCTCTGAATGGATGTTTTCAATGGCAATTTGGAAGCCATAGAAACATCTAGCCTCTGGA 5592 Query 46984 ATCTGTACCTCTGTACAAAATCGTTCAGACAA-ATTCTCATTCACTATTCCATCACTAGC 47042 || || || || | || || | || | ||| ||| ||||| || || |||||||| || Sbjct 5591 ATTTGAACTTCACT-CATAAACTTTGTGGCAAGATTTTCATTGACAATACCATCACTGGC 5533 Query 47043 AGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGT---TTATT 47099 ||| ||||| ||||| |||| || ||||| ||| | | | | | || || Sbjct 5532 AGCGAAAAAGGCCAAAACATTGGATATGAAATAACGTTCGTTATCATTTAATTTCTTGTT 5473 Query 47100 CCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGC 47159 ||| || |||| |||| || | ||| | |||||| |||||||| || || || || Sbjct 5472 CCAATCGTTGAGATCTGGTGCCAAATCAATTTCTTCGGCTGTCCAAAAACTGGCTTCAGC 5413 Query 47160 TTTTTTATACATATTCCATATATCACGATATTGGATCGGAAAAATAACAAATCTAT 47215 || ||| ||||| |||||||||||| | || ||| || || | |||||||||| Sbjct 5412 TTGTTTGTACATCTTCCATATATCATTGTGTTTGATTGGGAATAACACAAATCTAT 5357 >seq2 Length=160969 Score = 143 bits (158), Expect = 4e-29 Identities = 1017/1630 (62%), Gaps = 53/1630 (3%) Strand=Plus/Minus Query 75398 GCTGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAA 75457 |||||| | ||||| |||||||||||||| || || |||||| |||| ||| || Sbjct 40024 GCTGGTCTGGTACGGAGATAGTACATACCGGTCTTGAGACCCTTTTTCCAGGAGTAAAAG 39965 Query 75458 TGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATATTCATCGACTGACTT 75517 ||||| ||| ||||||||| | | || || || ||| | ||| | ||| ||| Sbjct 39964 TGCATCGATGTGAGTTTGGAAAAGGTGGGCTCAGCAATAAAGACATTGAAGCTCTGGCTT 39905 Query 75518 TGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCC 75577 || || || || || || | || || ||||| | || | ||| ||||| |||||||| Sbjct 39904 TGGTCAATAAAGGCACCACGCTCGGCGGCCATGTCAATGAGGGTTCTTTGACGAATTTCC 39845 Query 75578 CAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAAGATTTG-----TATTTTGAATGG 75632 || | |||||| | | | ||||| ||| || || ||||| ||| ||| || Sbjct 39844 CAGACTGTTTTGTAGAGCTCTTTGAGATCGTCGGG--GATTTCCTCAATATCTTGGATAC 39787 Query 75633 ATCCGCCATC-AGATATAATTGTATTCTTGATCTCATCATTCCACAATTTTCTCTCGGTT 75691 || | | ||| || ||| ||||||||||| ||| | ||| | Sbjct 39786 TGCCTCTGTGGAGA-ATGATTTGGTTCTTGATCTCTGGCGACCATAGACCAAGCTCCATG 39728 Query 75692 AAAACTCTAAGGAGATGAGGATTAACAATTTGAAATTCTCCAGACAATACTCTTCGAGTG 75751 | | | | ||||| || ||| ||||| ||||| || | ||| || | ||| || Sbjct 39727 AGATCGGTGAGGAGTTGTTTATTTACAATGGTGAATTCACCGGCCAACACACGACGACTG 39668 Query 75752 TAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAA 75811 ||||| || || ||||| || | | ||||||||||| | |||||||| || Sbjct 39667 TAAATGTTGGATGTGTATGGCTCAAAGCACTCATTGTTTCCGAGAATTTGAGAGGTGCTG 39608 Query 75812 GCAGTCGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCT-GATTTTATC 75870 || || ||||| || || | ||| | ||| ||||| ||||| ||| || ||| || || Sbjct 39607 GCGGTTGGCATTGGGGCAATCAAAAGACTGTTTCTAAGACCG-GTGGCCTTGATCTTTTC 39549 Query 75871 TTTTAGATATTTCCAATCCCAAAGATCTGATGGTACAACATCCCAGAGATCGTATTGTAG 75930 || || | ||| |||||| | ||||| ||| |||| | || ||||| || Sbjct 39548 CTTGAGTTTGGCCCAGTCCCAACGTGGAGATGGAGTGACACCCCACATGTCATATTGGAG 39489 Query 75931 AATTCCGTTGCTAGCATATGATCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAG 75990 || || || || ||| || | | | ||||| || | |||| |||| | Sbjct 39488 GATACCCTTAGAGGCTGGTGAGCCTTCAAAGGTTTCATAGGCACCGTGGGCAGCAGCCAA 39429 Query 75991 TTCGCAACTCGCCTCTAACGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTAAGATC 76050 || | || | || | |||| || |||||| ||||| ||| || | Sbjct 39428 CTCATTAGAGGCTGTGAGAGCGGCAAAATAGATGGTTTCGGCAATCTCACGATTGAG-TG 39370 Query 76051 TTGC-GCTTCAAGACTATCAAAAGGATAATGTAAAAGAATAAATGCATCTGCTAGTCCCT 76109 | || || || | |||||||| || | | ||||| |||| || || || | Sbjct 39369 TGGCAGCGCCAGTAGAGTCAAAAGGTAAACGAAGGGCGATAAAGACATCGGCGAGACCTT 39310 Query 76110 GAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTCAGCTTCTGGAATAGGGT 76169 | | |||| |||||| ||||| |||||| | ||||| | | | ||| || | || | Sbjct 39309 GGATGCCAAGACCAATGGGTCTGTGTCTCATGTTGGACACCTTTGATTCGGGCACTGGAT 39250 Query 76170 AATAATTAATATCTATAATTTTATTGAGATTTCTGACAACTACTTTAACCACGTCCTTTA 76229 | || || | || || || || |||||||| || | ||| || || || | | Sbjct 39249 AGTAGTTTCTGTCAATGATCTTGTTGAGATTCTTGGTGATTACCTTGGTTACCTCATAGA 39190 Query 76230 GTTTGAGAAAATCAAATT--------------TT-------CCATCTATC---ACAAACA 76265 | | || ||| ||| || || | | | |||| || Sbjct 39189 GATGTTGATGGTCATATTCCTTTTCTTTGGGGTTGGTGGAACCTTGTTTTTGGACAA-CA 39131 Query 76266 TATTAAG----AGCTATAGATGCTAGATTACAAACGGCTACCTCATTAGCATTGGCATAT 76321 |||| | ||| ||||| || | ||| |||||||| || || | | || ||| Sbjct 39130 TATTTGGGCAAAGCAATAGAGGCCAAATTGCAAACGGCCACTTCCTCTGGCGAGGTGTAT 39071 Query 76322 TGTATTATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTTGTTGGTTGCTC 76381 || | || || ||||| || || || | || || ||||| |||||||| ||| Sbjct 39070 TGGACGATTTCTGTGCAAAGGTTGCTGCTGGAAATGGTGCCAAGGTTTTGTTGATTGGAT 39011 Query 76382 TTTTTGTTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAATCTGTGATTCG 76441 ||| || || | || || || || | || || || |||||||| || || | |||| Sbjct 39010 TTTGAATTGCAGGCATCTTTGTAGAGGATGAATGGGGTACCAGTTTCGATTTGGGCTTCG 38951 Query 76442 ATAATAGATTTCCAGACGACTCTAGCTTTTATTATAGATTTGT----ATCGCTTCTCTCT 76497 | ||| | ||||| | || ||||| || | | ||| ||| | | || Sbjct 38950 AGAATGGCAAACCAGAGGTCTTGGGCTTTGATCACACGCTTGGCAAGATCTGGTGTGGCT 38891 Query 76498 TTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACA 76557 | | ||||| ||| | | ||| || || | || |||| ||||| Sbjct 38890 T-CGTATTGGAGATAGAGTTTTCTAAACTCTTCGCTATGGCACTCGGCCAAGCCAGGGGC 38832 Query 76558 TTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATC 76617 ||| || ||||| | | ||||| || | | || || || | || ||||||||| || Sbjct 38831 TTCGTTGGGACAAAAGAGGGACCAATCGGCGTTTTGCTCGACTCTTTCCATAAAGAGGTC 38772 Query 76618 AGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTT 76677 | | ||| || || ||| || |||| || ||| ||| || || || ||||| Sbjct 38771 ACTGACCCAGAGGGCGTAAAAGAGGTCTCTGGCTCTCATTTCCTCTTTGCCGTGGTTCTT 38712 Query 76678 TTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATAAC 76737 ||| | ||| | ||||| | |||||| | |||||||| || | || | || | | Sbjct 38711 TTTCAAATCGATAAACTCAAAAATATCGGCGTGCCATGGCTCCAAGTAGACGGCAAAGGC 38652 Query 76738 ACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAA 76797 |||| || || ||| || || || | ||||||||||||| |||| | || | | Sbjct 38651 ACCCTTTCTCTTGCCACCGCCTTGGTCGACGTATCTGGCAGTGTCATTAAAGACACGAAG 38592 Query 76798 CATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACG 76857 ||| || | ||| ||||| ||||| || || || ||| |||||||| | | || | Sbjct 38591 CATGGGGACAATACCGTTGGATGTGCCGTTGGTGCCACGGATATAACTGCTGCTGGCTCT 38532 Query 76858 AATATT---ACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCG 76914 || || || | |||| || || || || || |||| ||| || ||||| | Sbjct 38531 GATCTTGTGAC-AGGCGATA--CCAATGCCACCGGCAGATTTACTGATGAGGGCACACTG 38475 Query 76915 TTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCT 76974 ||| | ||||||||||| || ||||| || ||| |||| | | || ||||| || Sbjct 38474 TTTGAGAGTGTCATAGATACCGTCTATCGAGTCTTCCTTCATTTGCACGAGGAAACAACT 38415 Query 76975 AGACATTTGA 76984 ||||| ||| Sbjct 38414 TGACATCTGA 38405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712923456456960