Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Polysphondylium_20violaceum_20[genbank_20GCA_5F000277445.1_202012- 07-09] 1,228 sequences; 25,723,383 total letters Query= NC_031761.1 Length=131855 Score E Sequences producing significant alignments: (Bits) Value seq1179 125 6e-24 seq79 116 3e-21 seq57 111 1e-19 seq298 93.3 4e-14 >seq1179 Length=2421 Score = 125 bits (138), Expect = 6e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||||||||||||||| || ||||| || ||||| || ||| | ||| ||| | Sbjct 2203 ATGCAAATTTTTGTCAAGACTTTGACTGGTAAAACTATCACCCTTGAAGTTGAAGGTTCC 2262 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| | ||| | || ||| |||||| || |||||||| |||| ||||||| Sbjct 2263 GATACAATTGATAATGTTAAAACTAAAATTCAAGATAAAGAAGGTATTCCACCCGATCAA 2322 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 ||||| ||||||| ||| || ||||||||||||||| || ||| | | || ||||| Sbjct 2323 CAAAGACTTATTTTTGCAGGTAAACAATTGGAAGATGGTAGAACCTTATCTGACTATAAC 2382 Query 111280 ATACAAAAAGAATCTACACTACATTTAGT 111308 || ||||||||||| || || || || || Sbjct 2383 ATTCAAAAAGAATCCACTCTTCACTTGGT 2411 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 111099 AATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111158 |||||||||||| || ||||| || || || |||||||| ||| | ||| ||| | Sbjct 1974 AATGCAAATTTTCGTTAAAACCTTAACTGGTAAAACCATCACCCTTGAAGTTGAAGGCTC 2033 Query 111159 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111218 ||| | ||| | || || |||||| || |||||||| | || |||||| Sbjct 2034 TGATACAATTGATAACGTCAAGACTAAAATTCAAGATAAAGAAGGTATCCCACCCGATCA 2093 Query 111219 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111278 |||| | | || | ||| || |||||||||||||| || |||| || | || || || Sbjct 2094 ACAACGTTTAATCTTTGCAGGTAAACAATTGGAAGACGGTAGAACTTTGTCTGACTACAA 2153 Query 111279 TATACAAAAAGAATCTACACTACATTTAGT 111308 || ||||||||||| || || |||||||| Sbjct 2154 CATTCAAAAAGAATCCACTCTTCATTTAGT 2183 >seq79 Length=61457 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||||||||| |||||||| || || || |||||||| ||| | ||| ||| | Sbjct 10753 ATGCAAATTTTCGTCAAAACTTTAACTGGTAAAACCATCACCCTTGAAGTTGAAGGCTCT 10694 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| || ||| | ||||| |||||| ||||||||||| | || ||||||| Sbjct 10693 GATACTATTGAAAATGTAAAGACTAAAATTCAAGACAAAGAAGGTATCCCACCCGATCAA 10634 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 ||||| || |||| || || |||||||| ||||| | ||| | | || || || Sbjct 10633 CAAAGACTCATTTTCGCCGGTAAACAATTAGAAGACGGTCGTACTTTATCTGACTACAAC 10574 Query 111280 ATACAAAAAGAATCTACACTACATTTAGT 111308 || |||||||||||||| || |||||||| Sbjct 10573 ATCCAAAAAGAATCTACTCTCCATTTAGT 10545 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 111099 AATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111158 ||||||||||||||| ||||| || || ||||||||||| ||| | ||| ||| | Sbjct 11210 AATGCAAATTTTTGTTAAAACTTTAACTGGCAAAACCATCACCCTTGAAGTCGAAGGCTC 11151 Query 111159 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111218 ||| || ||| | ||||| |||||| ||||||||||| | || |||||| Sbjct 11150 TGATACTATTGAAAATGTAAAGACTAAAATTCAAGACAAAGAAGGTATCCCACCCGATCA 11091 Query 111219 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111278 |||| | | || | ||| || |||||||| |||||| || ||| | | || || || Sbjct 11090 ACAACGTTTAATCTTTGCCGGTAAACAATTAGAAGATGGTAGAACCTTATCTGACTACAA 11031 Query 111279 TATACAAAAAGAATCTACACTACATTTAGT 111308 || ||||||||||| || || ||||| || Sbjct 11030 CATCCAAAAAGAATCCACTCTTCATTTGGT 11001 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||||||||| |||||||| ||||| || ||||||||||| | ||| ||| Sbjct 10525 ATGCAAATTTTCGTCAAAACCTTGACTGGTAAAACCATTACTCTTGAAGTCGAAGGTTCA 10466 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 || | ||| | || ||| |||||| ||||||||||| |||| ||||||| Sbjct 10465 GACACCATTGAAAATGTTAAAACTAAAATTCAAGACAAAGAAGGTATTCCACCCGATCAA 10406 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 ||| | | || | ||| || || |||||||||||| | ||| | | ||||| || Sbjct 10405 CAACGTTTAATCTTTGCTGGTAAGCAATTGGAAGATGGTCGTACTTTATCTGATTACAAC 10346 Query 111280 ATACAAAAAGAATCTACACTACATTTAGT 111308 || |||||||||||||| || |||||||| Sbjct 10345 ATCCAAAAAGAATCTACTCTCCATTTAGT 10317 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||||||||| |||||||| ||||| || || || |||||| | ||| ||| | Sbjct 10297 ATGCAAATTTTCGTCAAAACCTTGACTGGTAAGACTATTACCCTTGAAGTCGAAGGCTCT 10238 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| | ||| | || || ||| ||| || || ||||| | || ||||||| Sbjct 10237 GATACCATTGAAAACGTTAAGACAAAGATTCAAGATAAGGAAGGTATCCCACCCGATCAA 10178 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 ||||| || |||| || || |||||||| ||||| | ||| | | || ||||| Sbjct 10177 CAAAGACTCATTTTCGCCGGTAAACAATTAGAAGACGGTCGTACTTTATCTGACTATAAC 10118 Query 111280 ATACAAAAAGAATCTACACTACATTTAGT 111308 || ||||| ||||| || || |||||||| Sbjct 10117 ATTCAAAAGGAATCCACTCTCCATTTAGT 10089 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||||||||| |||||||| ||||| || || || ||||| | ||| ||| Sbjct 10981 ATGCAAATTTTCGTCAAAACCTTGACTGGTAAGACTATTACTCTTGAAGTCGAAGGTTCA 10922 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 || | ||| | || || || || ||||||||||| | || ||||||| Sbjct 10921 GACACCATTGAAAACGTTAAGACCAAGATCCAAGACAAAGAAGGTATCCCACCCGATCAA 10862 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 ||| | | |||| ||| || |||||||| |||||| || |||| | | || || || Sbjct 10861 CAACGTTTAATTTTTGCCGGTAAACAATTAGAAGATGGTAGAACTTTATCTGACTACAAC 10802 Query 111280 ATACAAAAAGAATCTACACTACATTTAGT 111308 || |||||||||||||| || |||||||| Sbjct 10801 ATCCAAAAAGAATCTACTCTTCATTTAGT 10773 >seq57 Length=71319 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||||||||| ||||| || ||||| || ||||||||||| | ||| ||| | Sbjct 44098 ATGCAAATTTTCGTCAAGACCTTGACTGGTAAAACCATTACTCTTGAAGTCGAAGGCTCA 44039 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 || || ||| | || || || ||| ||||||||||| |||| ||||||| Sbjct 44038 GACACTATTGAAAACGTCAAGACCAAGATTCAAGACAAAGAAGGTATTCCACCCGATCAA 43979 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 ||| | | |||| || || |||||||| |||||| || |||| | | ||||| || Sbjct 43978 CAACGTTTAATTTTCGCCGGTAAACAATTAGAAGATGGTAGAACTTTATCTGATTACAAC 43919 Query 111280 ATACAAAAAGAATCTACACTACATTTAGT 111308 || ||||||||||| || || |||||||| Sbjct 43918 ATCCAAAAAGAATCCACTCTTCATTTAGT 43890 Score = 109 bits (120), Expect = 5e-19 Identities = 155/216 (72%), Gaps = 14/216 (6%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 |||||||||||||| ||||| | || || |||||||||||| | ||| ||| Sbjct 44326 ATGCAAATTTTTGTTAAAACTCTCACTGGTAAAACCATTACCCTTGAAGTCGAA------ 44273 Query 111160 GATTCTGTTGGCCAGGTAAAA---CAA----AAAATTGCCGACAAAGAAGGCGTTCCCGT 111212 | ||||| | ||| |||| ||| || ||| || || ||||| | || Sbjct 44272 GGTTCTGATA-CCATCGAAAATGTCAAGACCAAGATTCAAGATAAGGAAGGTATCCCACC 44214 Query 111213 CGATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGA 111272 |||||||||||| ||||||| ||| || |||||||| |||||| || |||| | | || Sbjct 44213 CGATCAACAAAGACTTATTTTTGCTGGTAAACAATTAGAAGATGGTAGAACTTTATCTGA 44154 Query 111273 TTATAATATACAAAAAGAATCTACACTACATTTAGT 111308 || ||||| ||||||||||| || || |||||||| Sbjct 44153 CTACAATATTCAAAAAGAATCCACTCTTCATTTAGT 44118 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||||||||| || || || ||||| || || |||||||| | ||| ||| Sbjct 43870 ATGCAAATTTTCGTTAAGACCTTGACTGGTAAGACCATTACTCTTGAAGTTGAAGGTTCT 43811 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| | ||| | || ||| || ||| ||||||||||| |||| ||||||| Sbjct 43810 GATACCATTGAAAACGTTAAAACCAAGATTCAAGACAAAGAAGGTATTCCACCCGATCAA 43751 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 ||||| ||||||| || || |||||||| ||||| | ||| | | || ||||| Sbjct 43750 CAAAGACTTATTTTCGCCGGTAAACAATTAGAAGACGGTCGTACTTTATCTGACTATAAC 43691 Query 111280 ATACAAAAAGAATCTACACTACATTTAGT 111308 || |||||||||||||| || |||||||| Sbjct 43690 ATCCAAAAAGAATCTACCCTCCATTTAGT 43662 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 |||||||||||||| ||||| | || || ||||||||||| | ||| ||| | Sbjct 43642 ATGCAAATTTTTGTTAAAACTCTCACTGGTAAAACCATTACTCTTGAAGTAGAAGGCTCA 43583 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 || | ||| | || ||| |||||| ||||||||||| | || ||||||| Sbjct 43582 GACACCATTGAAAATGTTAAAACTAAAATTCAAGACAAAGAAGGTATCCCACCCGATCAA 43523 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 ||| | | || | ||| || ||||||||||| ||| | ||| | | || || || Sbjct 43522 CAACGTTTAATCTTTGCTGGTAAACAATTGGAGGATGGTCGTACTTTATCTGACTACAAC 43463 Query 111280 ATACAAAAAGAATCTACACTACATTTAGT 111308 || ||||| |||||||| || |||||||| Sbjct 43462 ATCCAAAAGGAATCTACTCTCCATTTAGT 43434 >seq298 Length=27992 Score = 93.3 bits (102), Expect = 4e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 111193 GACAAAGAAGGCGTTCCCGTCGATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAA 111252 ||||||||||| | ||| |||||||||||| ||||| | ||| || |||||||| ||| Sbjct 13308 GACAAAGAAGGTATCCCCCCCGATCAACAAAGACTTATCTTTGCTGGTAAACAATTAGAA 13249 Query 111253 GATTCTAAAACTATGGCCGATTATAATATACAAAAAGAATCTACACTACATTTAGT 111308 || | ||| | ||||||| || || |||||||||||||| || || ||||| Sbjct 13248 GACGGTCGTACTTTATCCGATTACAACATCCAAAAAGAATCTACCCTTCACTTAGT 13193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421804887068128