Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Polysphondylium_20violaceum_20[genbank_20GCA_5F000277445.1_202012- 07-09] 1,228 sequences; 25,723,383 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq697 228 8e-55 >seq697 Length=10231 Score = 228 bits (252), Expect = 8e-55 Identities = 414/602 (69%), Gaps = 8/602 (1%) Strand=Plus/Minus Query 23501 ACAATAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAA 23560 |||| ||||| ||||| | || || || || || || | ||| || | || ||||| | Sbjct 5953 ACAACAAACAGGCAAAGTTGCAGTGGAGACCCTCGTCACGACTGATGAGCTCGTTAGAGA 5894 Query 23561 ATGTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGAT-CCG 23619 |||| || || ||||| || || ||||| || | |||||| || | |||||| | ||| Sbjct 5893 ATGTCAAACCGGGCATCAAACCACGTTTCTTGAGCCAAAAGATAG-AGCAAAAACTGCCG 5835 Query 23620 GAAAAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTA 23679 || || |||||||| || || |||||||| || | |||| |||||| | || Sbjct 5834 CTGAAAAAGATACCCTCGACGGCGGCAAAGGCAACTAAACGTTCGGCAAATGAT---TTG 5778 Query 23680 TAATCAGAAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTCA 23739 | | |||||| | || ||| | |||||| ||| ||||| || || || Sbjct 5777 CTGTTGGTGATCCATCTCAATGCCCAGTCGGCCTTCTTTTTCACACAGGGGATGGTCTCG 5718 Query 23740 ATTGCTTTTAAGAGAAAAGTTTTTTCTTCATTATCTGTTATATATGTATCAATTAGTAAA 23799 || || || || || | ||||| | | ||| || || || || || | | | Sbjct 5717 ATGGCGTTGAATAGTTTGCTCTTTTCCACGCTGTCTTGGATGTAGGTGTCGATCAAGAGA 5658 Query 23800 CTATACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCT 23859 || || | || ||||| || |||||||| ||||| || || ||||| ||||||||||| Sbjct 5657 CTGTAGGTCTCTGAATGGATGTTTTCAATGGCAATTTGGAAGCCATAGAAACATCTAGCC 5598 Query 23860 TCAGACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCA 23919 || | | |||||| ||| | | ||| || | || | |||||| || |||||||||||| Sbjct 5597 TCTGGAATTTGAACTTCACTCATAAACTTTGTGGCAAGATTTTCATTGACAATACCATCA 5538 Query 23920 CTAGCAGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTC---ATCAGTTGATAAT 23976 || ||||| || || || | ||||| ||| |||| | ||| |||| || || Sbjct 5537 CTGGCAGCGAAAAAGGCCAAAACATTGGATATGAAATAACGTTCGTTATCATTTAATTTC 5478 Query 23977 TTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCAAAAACTTGCC 24036 || |||||||| || | |||| || ||||||| ||| || ||||||||||||| || Sbjct 5477 TTGTTCCAATCGTTGAGATCTGGTGCCAAATCAATTTCTTCGGCTGTCCAAAAACTGGCT 5418 Query 24037 AAGGCACGCTTATACATTAGCCAAATATCATTATGTTGTATTGGAAATATTACGAATCTA 24096 || | || ||||| ||| |||||||| |||| ||||| |||| || |||||| Sbjct 5417 TCAGCTTGTTTGTACATCTTCCATATATCATTGTGTTTGATTGGGAATAACACAAATCTA 5358 Query 24097 TC 24098 || Sbjct 5357 TC 5356 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521479995159200