Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Polysphondylium_20violaceum_20[genbank_20GCA_5F000277445.1_202012- 07-09] 1,228 sequences; 25,723,383 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq778 82.4 5e-11 seq57 82.4 5e-11 >seq778 Length=8042 Score = 82.4 bits (90), Expect = 5e-11 Identities = 159/233 (68%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 44108 ATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCG 44167 || || ||||| ||||| | || | ||| || || || |||||||||||||| || Sbjct 4689 ATACCACCTCTAAGTCTGAGAACTAAGTGGAGGGTTGATTCTTTTTGGATGTTGTAGTCA 4748 Query 44168 GCGA--GTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTG 44225 | | ||| | | || || | || || ||||||||||| ||||| || ||||| | Sbjct 4749 GATAAAGTT--CTACCATCTTCTAATTGTTTACCGGCAAAGATTAAACGTTGTTGATCGG 4806 Query 44226 AAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATT 44285 || | |||||| || || ||||| ||| | || | |||||||| | || Sbjct 4807 GTGGGATACCTTCTTTGTCTTGGATCTTGGCCTTGACGTTTTCGATGGTGTCAGAACCTT 4866 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 | || || | || || ||||| || || | ||| || ||||||||||||||| Sbjct 4867 CGACTTCGAGAGTGATGGTCTTACCAGTTAAGGTTTTAACGAAGATTTGCATG 4919 >seq57 Length=71319 Score = 82.4 bits (90), Expect = 5e-11 Identities = 161/236 (68%), Gaps = 4/236 (2%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || ||||| ||||| | || | ||||| ||| || |||||||||||||| Sbjct 43865 TTGCATACCACCTCTAAGTCTAAGAACTAAATGAAGAGTGGATTCTTTTTGGATGTTGTA 43924 Query 44164 ATCGG--CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGA 44221 ||| | |||| | | || || | || || ||||| || || ||||| || ||| Sbjct 43925 ATCAGATAAAGTT--CTACCATCTTCTAATTGTTTACCGGCGAAAATTAAACGTTGTTGA 43982 Query 44222 TCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCG 44281 || | || | |||||| || || ||||| ||| | || | || ||||| | | Sbjct 43983 TCGGGTGGAATACCTTCTTTGTCTTGAATCTTGGTCTTGACGTTTTCAATAGTGTCTGAG 44042 Query 44282 GATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| || || | ||||| || || || || | |||||| ||||| |||||||| Sbjct 44043 CCTTCGACTTCAAGAGTAATGGTTTTACCAGTCAAGGTCTTGACGAAAATTTGCAT 44098 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359985012293676