Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Polysphondylium_20violaceum_20[genbank_20GCA_5F000277445.1_202012- 07-09] 1,228 sequences; 25,723,383 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq778 161 2e-34 seq57 161 2e-34 seq79 159 8e-34 seq1179 141 2e-28 seq298 138 3e-27 >seq778 Length=8042 Score = 161 bits (178), Expect = 2e-34 Identities = 167/219 (76%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| ||||| | || || || || ||||| ||||| || ||| | || ||| Sbjct 4915 CAAATCTTCGTTAAAACCTTAACTGGTAAGACCATCACTCTCGAAGTCGAAGGTTCTGAC 4856 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| ||||| || ||||||||||| ||||| || || || ||| Sbjct 4855 ACCATCGAAAACGTCAAGGCCAAGATCCAAGACAAAGAAGGTATCCCACCCGATCAACAA 4796 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| ||||| ||||| | |||||||| || ||| | | || || ||| || Sbjct 4795 CGTTTAATCTTTGCCGGTAAACAATTAGAAGATGGTAGAACTTTATCTGACTACAACATC 4736 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||||||||||||| || || | ||| | ||||| ||| Sbjct 4735 CAAAAAGAATCAACCCTCCACTTAGTTCTCAGACTTAGA 4697 >seq57 Length=71319 Score = 161 bits (178), Expect = 2e-34 Identities = 167/219 (76%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || || | || || ||||| || || || || || ||| |||||||| Sbjct 44095 CAAATTTTCGTCAAGACCTTGACTGGTAAAACCATTACTCTTGAAGTCGAAGGCTCAGAC 44036 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || |||||||| |||||||| ||||||||||| || || || || || ||| Sbjct 44035 ACTATTGAAAACGTCAAGACCAAGATTCAAGACAAAGAAGGTATTCCACCCGATCAACAA 43976 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || |||||||| ||||| | |||||||| || ||| | | ||||| ||| || Sbjct 43975 CGTTTAATTTTCGCCGGTAAACAATTAGAAGATGGTAGAACTTTATCTGATTACAACATC 43916 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||||||||||| || || ||| | ||| | ||||| ||| Sbjct 43915 CAAAAAGAATCCACTCTTCATTTAGTTCTTAGACTTAGA 43877 Score = 156 bits (172), Expect = 1e-32 Identities = 166/219 (76%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || ||||||||||| || ||||| || || || || || ||| |||||||| Sbjct 43639 CAAATTTTTGTTAAAACTCTCACTGGTAAAACCATTACTCTTGAAGTAGAAGGCTCAGAC 43580 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || || ||| || ||||| ||||||||||| ||||| || || || ||| Sbjct 43579 ACCATTGAAAATGTTAAAACTAAAATTCAAGACAAAGAAGGTATCCCACCCGATCAACAA 43520 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| || || ||||| | || ||||| | ||| | | || || ||| || Sbjct 43519 CGTTTAATCTTTGCTGGTAAACAATTGGAGGATGGTCGTACTTTATCTGACTACAACATC 43460 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||||| ||||| || || ||| | ||| | ||||||||| Sbjct 43459 CAAAAGGAATCTACTCTCCATTTAGTTCTTAGACTCAGA 43421 Score = 152 bits (168), Expect = 1e-31 Identities = 165/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || ||||||||||| || ||||| || ||||| || || ||| | || || Sbjct 44323 CAAATTTTTGTTAAAACTCTCACTGGTAAAACCATTACCCTTGAAGTCGAAGGTTCTGAT 44264 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || ||||| |||||||| || || ||||| ||||| || || || ||| Sbjct 44263 ACCATCGAAAATGTCAAGACCAAGATTCAAGATAAGGAAGGTATCCCACCCGATCAACAA 44204 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||||| || || || ||||| | |||||||| || ||| | | || || || | Sbjct 44203 AGACTTATTTTTGCTGGTAAACAATTAGAAGATGGTAGAACTTTATCTGACTACAATATT 44144 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||||||||||| || || ||| | || | ||||||||| Sbjct 44143 CAAAAAGAATCCACTCTTCATTTAGTCCTCAGACTCAGA 44105 Score = 147 bits (162), Expect = 5e-30 Identities = 164/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || || | || || ||||| || ||||| || || ||| |||| || Sbjct 43183 CAAATTTTCGTCAAGACCTTGACTGGTAAAACCATTACCCTTGAAGTCGAAGGCTCTGAT 43124 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| |||||||| ||||||||||| || || || || || ||| Sbjct 43123 ACCATCGAAAACGTCAAGACCAAGATTCAAGACAAAGAAGGTATTCCACCCGATCAACAA 43064 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || || || ||||| | ||||| || | ||| | | || |||||| || Sbjct 43063 CGTTTAATTTTTGCTGGTAAACAATTAGAAGACGGTCGTACTTTATCTGACTATAACATC 43004 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||||| ||||| || || ||| | ||| | ||||||||| Sbjct 43003 CAAAAGGAATCTACCCTCCATTTAGTTCTCAGACTCAGA 42965 Score = 147 bits (162), Expect = 5e-30 Identities = 166/220 (75%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || || | || || || || || |||||||| || ||| | || || Sbjct 43411 CAAATTTTCGTTAAGACCTTGACTGGTAAGACCATTACCCTCGAAGTCGAAGGTTCTGAT 43352 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || ||||| |||||||| || || ||||| ||||| || || || ||| Sbjct 43351 ACCATCGAAAATGTCAAGACCAAGATTCAAGATAAGGAAGGTATCCCACCCGATCAACAA 43292 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCC-GATTATAACGT 178102 || | || |||||||| ||||| | ||||||||| | || |||| | ||||| || | Sbjct 43291 CGTTTAATTTTCGCCGGTAAACAATTAGAAGATGGACGTAC-CTTGTCTGATTACAATAT 43233 Query 178103 CCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||||||||||| || || ||| | ||| | ||||| ||| Sbjct 43232 CCAAAAAGAATCTACTCTCCATTTAGTTCTTAGACTTAGA 43193 Score = 147 bits (162), Expect = 5e-30 Identities = 164/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || || | || || || || || || || || || ||| | || || Sbjct 43867 CAAATTTTCGTTAAGACCTTGACTGGTAAGACCATTACTCTTGAAGTTGAAGGTTCTGAT 43808 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || ||||| ||| |||||||| ||||||||||| || || || || || ||| Sbjct 43807 ACCATTGAAAACGTTAAAACCAAGATTCAAGACAAAGAAGGTATTCCACCCGATCAACAA 43748 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||||| |||||||| ||||| | ||||| || | ||| | | || |||||| || Sbjct 43747 AGACTTATTTTCGCCGGTAAACAATTAGAAGACGGTCGTACTTTATCTGACTATAACATC 43688 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||||||||||| || || ||| | || | ||||||||| Sbjct 43687 CAAAAAGAATCTACCCTCCATTTAGTCCTCAGACTCAGA 43649 >seq79 Length=61457 Score = 159 bits (176), Expect = 8e-34 Identities = 169/220 (77%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| |||||| | || || ||||| |||||||| || || ||| |||| || Sbjct 10750 CAAATTTTCGTCAAAACTTTAACTGGTAAAACCATCACCCTTGAAGTTGAAGGCTCTGAT 10691 Query 177984 ACCATCGAGAACGTCAA-ACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCA 178042 || || || || || || || ||| ||||| ||||||||||| ||||| || || || || Sbjct 10690 ACTATTGAAAATGTAAAGACTAAA-ATTCAAGACAAAGAAGGTATCCCACCCGATCAACA 10632 Query 178043 ACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGT 178102 | |||| || |||||||| ||||| | ||||| || | ||| | | || || ||| | Sbjct 10631 AAGACTCATTTTCGCCGGTAAACAATTAGAAGACGGTCGTACTTTATCTGACTACAACAT 10572 Query 178103 CCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||||||||||| || || ||| | ||| | ||||||||| Sbjct 10571 CCAAAAAGAATCTACTCTCCATTTAGTTCTCAGACTCAGA 10532 Score = 143 bits (158), Expect = 6e-29 Identities = 163/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| ||||| | || || ||||| || || || || || ||| | |||||| Sbjct 10522 CAAATTTTCGTCAAAACCTTGACTGGTAAAACCATTACTCTTGAAGTCGAAGGTTCAGAC 10463 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || || ||| || ||||| ||||||||||| || || || || || ||| Sbjct 10462 ACCATTGAAAATGTTAAAACTAAAATTCAAGACAAAGAAGGTATTCCACCCGATCAACAA 10403 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| || || || || | |||||||| | ||| | | ||||| ||| || Sbjct 10402 CGTTTAATCTTTGCTGGTAAGCAATTGGAAGATGGTCGTACTTTATCTGATTACAACATC 10343 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||||||||||| || || ||| | || | ||||||||| Sbjct 10342 CAAAAAGAATCTACTCTCCATTTAGTCCTCAGACTCAGA 10304 Score = 143 bits (158), Expect = 6e-29 Identities = 163/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| ||||| | || || || || || || || || || ||| | |||||| Sbjct 10978 CAAATTTTCGTCAAAACCTTGACTGGTAAGACTATTACTCTTGAAGTCGAAGGTTCAGAC 10919 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || ||||| || ||||| || ||||||||||| ||||| || || || ||| Sbjct 10918 ACCATTGAAAACGTTAAGACCAAGATCCAAGACAAAGAAGGTATCCCACCCGATCAACAA 10859 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || ||||| ||||| | |||||||| || ||| | | || || ||| || Sbjct 10858 CGTTTAATTTTTGCCGGTAAACAATTAGAAGATGGTAGAACTTTATCTGACTACAACATC 10799 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||||||||||| || || ||| | || | ||||| ||| Sbjct 10798 CAAAAAGAATCTACTCTTCATTTAGTCCTCAGACTTAGA 10760 Score = 141 bits (156), Expect = 2e-28 Identities = 165/220 (75%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || |||||| | || || ||||| |||||||| || || ||| |||| || Sbjct 11206 CAAATTTTTGTTAAAACTTTAACTGGCAAAACCATCACCCTTGAAGTCGAAGGCTCTGAT 11147 Query 177984 ACCATCGAGAACGTCAA-ACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCA 178042 || || || || || || || ||| ||||| ||||||||||| ||||| || || || || Sbjct 11146 ACTATTGAAAATGTAAAGACTAAA-ATTCAAGACAAAGAAGGTATCCCACCCGATCAACA 11088 Query 178043 ACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGT 178102 ||| | ||||| ||||| ||||| | |||||||| || || | | || || ||| | Sbjct 11087 ACGTTTAATCTTTGCCGGTAAACAATTAGAAGATGGTAGAACCTTATCTGACTACAACAT 11028 Query 178103 CCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||||||||||| || || ||| | || | ||| | ||| Sbjct 11027 CCAAAAAGAATCCACTCTTCATTTGGTCCTTAGATTAAGA 10988 Score = 138 bits (152), Expect = 3e-27 Identities = 162/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| ||||| | || || || || || ||||| || || ||| |||| || Sbjct 10294 CAAATTTTCGTCAAAACCTTGACTGGTAAGACTATTACCCTTGAAGTCGAAGGCTCTGAT 10235 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || ||||| || ||||||||| || || ||||| ||||| || || || ||| Sbjct 10234 ACCATTGAAAACGTTAAGACAAAGATTCAAGATAAGGAAGGTATCCCACCCGATCAACAA 10175 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| || |||||||| ||||| | ||||| || | ||| | | || |||||| | Sbjct 10174 AGACTCATTTTCGCCGGTAAACAATTAGAAGACGGTCGTACTTTATCTGACTATAACATT 10115 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||||| ||||| || || ||| | || | ||||| ||| Sbjct 10114 CAAAAGGAATCCACTCTCCATTTAGTCCTCAGACTTAGA 10076 >seq1179 Length=2421 Score = 141 bits (156), Expect = 2e-28 Identities = 165/220 (75%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| ||||| | || || ||||| |||||||| || || ||| |||| || Sbjct 1978 CAAATTTTCGTTAAAACCTTAACTGGTAAAACCATCACCCTTGAAGTTGAAGGCTCTGAT 2037 Query 177984 ACCATCGAGAACGTCAA-ACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCA 178042 || || || |||||||| || ||| ||||| || |||||||| ||||| || || || || Sbjct 2038 ACAATTGATAACGTCAAGACTAAA-ATTCAAGATAAAGAAGGTATCCCACCCGATCAACA 2096 Query 178043 ACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGT 178102 ||| | ||||| || || ||||| | ||||| || || ||| | | || || ||| | Sbjct 2097 ACGTTTAATCTTTGCAGGTAAACAATTGGAAGACGGTAGAACTTTGTCTGACTACAACAT 2156 Query 178103 CCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||||||||||| || || ||| | ||| | ||| | ||| Sbjct 2157 TCAAAAAGAATCCACTCTTCATTTAGTTCTCAGATTAAGA 2196 Score = 123 bits (136), Expect = 6e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || || ||| | || || ||||| |||||||| || || ||| | || || Sbjct 2206 CAAATTTTTGTCAAGACTTTGACTGGTAAAACTATCACCCTTGAAGTTGAAGGTTCCGAT 2265 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || ||| || ||||| || |||||||| || || || || || ||| Sbjct 2266 ACAATTGATAATGTTAAAACTAAAATTCAAGATAAAGAAGGTATTCCACCCGATCAACAA 2325 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||||| || || || ||||| | |||||||| || || | | || |||||| | Sbjct 2326 AGACTTATTTTTGCAGGTAAACAATTGGAAGATGGTAGAACCTTATCTGACTATAACATT 2385 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTC 178139 ||||||||||| || || || | || | |||||| Sbjct 2386 CAAAAAGAATCCACTCTTCACTTGGTACTTAGACTC 2421 >seq298 Length=27992 Score = 138 bits (152), Expect = 3e-27 Identities = 148/196 (76%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 177947 AGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAAAA 178006 ||| ||||| || |||||||| || ||| | || || |||||||| || ||||| || Sbjct 13375 AGGTAAAACTATTACCCTCGAAGTTGAAGGTTCCGATACCATCGAAAATGTCAAGGCTAA 13316 Query 178007 GATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACA 178066 || || ||||||||||| ||||| || || || ||| |||||||||| || || ||||| Sbjct 13315 AATCCAAGACAAAGAAGGTATCCCCCCCGATCAACAAAGACTTATCTTTGCTGGTAAACA 13256 Query 178067 GCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCT 178126 | ||||| || | ||| | ||||||| ||| ||||||||||||| || || || | Sbjct 13255 ATTAGAAGACGGTCGTACTTTATCCGATTACAACATCCAAAAAGAATCTACCCTTCACTT 13196 Query 178127 TGTTTTGAGACTCAGA 178142 || | ||||||||| Sbjct 13195 AGTCCTCAGACTCAGA 13180 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203712260794232