Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protostelium_20mycophagum_20[genbank_20GCA_5F002081555.1_202017-04- 06] 2,577 sequences; 39,717,957 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq1881 127 2e-24 seq455 114 2e-20 seq1441 102 1e-16 >seq1881 Length=25171 Score = 127 bits (140), Expect = 2e-24 Identities = 249/364 (68%), Gaps = 8/364 (2%) Strand=Plus/Minus Query 24135 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 24194 || ||||| ||||| ||||| || || ||||| || ||||| || || || Sbjct 18044 CAAGCGAAGTCGCAATGTAGCCCTTCATCTCTTGATATGAATTCATTTGATTTTCCAAGA 17985 Query 24195 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGAA 24253 || ||| || || | ||| || |||||||| ||||| ||| || || ||||||||||| Sbjct 17984 CCCTCCATGAGTCCCCTCTTCTTCAGCCAAAAGATGGA-GCAGAAGGAACCAGAAAAGAA 17926 Query 24254 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTGTCATGTAT 24313 || || || || || |||||||||| ||||| |||||| || | | || | || Sbjct 17925 GATACCCTCCACAGCAGCAAAGGCAACGAGTCTCTCTCCAAAAGAGTCCGAATCGTTGAT 17866 Query 24314 CCA---CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATT 24370 ||| | || ||||| || |||||||||| || ||||| || || ||||| | Sbjct 17865 CCAGCGCATT---GCCCACTCTGCCTTCTTTTGTATGCAAGGAATGTGATCGATAGCGTG 17809 Query 24371 AAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACAT 24430 || | || || || || |||| | ||| || || |||| |||| || | Sbjct 17808 GAATAAGAGGTGCTTCTCTTTCTCATCTCGGATATACGTGTCGATCAGAAGAGAGTATGT 17749 Query 24431 TTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 24490 ||| | ||| ||||| || ||||| || ||||| || || || ||||| ||||| | ||| Sbjct 17748 TTCGGCATGTATGTTCTCTATGGCAATCTGAAAGCCATAAAAGCATCTGGCCTCTGGAAT 17689 Query 24491 CTGT 24494 |||| Sbjct 17688 CTGT 17685 >seq455 Length=31299 Score = 114 bits (126), Expect = 2e-20 Identities = 345/525 (66%), Gaps = 6/525 (1%) Strand=Plus/Plus Query 23963 CAATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 24022 || |||||| ||||||||||| ||||| | |||||| | |||||||| || || Sbjct 8396 CAGTCTATCGGCGACAAACTCGATATACTGTGTCATCAGGTTGGCGTTCATTCCAATCAG 8455 Query 24023 TTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAAT 24082 |||||| | |||| | || | ||| || | || || ||||| || || Sbjct 8456 ACCAACTGGCAAAGCCTCGGTGACAAACTCCTTCTCGCACTCCACGGCGTCAAGGATGAT 8515 Query 24083 AGATCTT-ACTGTTTCTTCACTCGGTGGATACAATAA-ATGTTTAAACATCAAACATGCG 24140 |||| || || |||| || ||| | || ||||| || | || || || Sbjct 8516 CT-TCTTCACGGTCTCTTGGCTGGGTTTCTCTTGTAGCATGTTGAAG-AGCAGGCAGGCA 8573 Query 24141 AAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGC 24200 || |||||||| || || ||||| | | ||| |||||||| || | || || ||| Sbjct 8574 AAGTCGCAGTGGAGTCCTTCGTCGCGAGAAATAAATTCGTTTGATGTGGAAAGACCTGGC 8633 Query 24201 ATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCT 24260 || || || | ||| || | |||||| ||||| || || ||||| ||||| || || Sbjct 8634 ATGAGACCTCTCTTCTTCAACCAAAAGATGGAACAGAAGGAACCAGAGAAGAAGATGCCC 8693 Query 24261 TCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTGTCATGTATCCACTTT 24320 ||||| || || || || | || | |||||| || | || |||| ||||| Sbjct 8694 TCTACGGCAGCGAAAGCGACGAGGCGTTCTCCGAAAGAGTCGGAATCATTGATCCAGCGA 8753 Query 24321 TGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAG-ATA 24379 ||||||| || ||||||||||| | || || || || || |||| ||||| || Sbjct 8754 AGAGCCCAGTCCGCCTTCTTTTTGATGCAGGGGATGTGGTCGATGGCATGGAAGAGCATT 8813 Query 24380 GtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATG 24439 | || || | || || | || || || ||||| ||| ||| | || | || Sbjct 8814 G-CCTTCTCGGTGGGGTCCTTGATGTACGTGTCTATCAAGAGAGAATAAGTCTCAGCGTG 8872 Query 24440 AATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTC 24484 ||||| |||||||| |||||||| || || || |||| ||||| Sbjct 8873 TATGTTCTCAATGGCAATTTGAAACCCATAAAAGCATCGCGCCTC 8917 >seq1441 Length=33442 Score = 102 bits (112), Expect = 1e-16 Identities = 252/375 (67%), Gaps = 13/375 (3%) Strand=Plus/Minus Query 53690 ACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA 53749 |||||| || || || || ||||||||||| || || || ||||||| | | |||| Sbjct 2482 ACAAACTTGGGCAGGGCGATGGATGCCAGATTGCACACCGCAACCTCAT---CCTGCGCA 2426 Query 53750 ---TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGA 53806 || | || ||||| ||||| | || ||| ||||||||||||| | || ||||| Sbjct 2425 GTGTACTCCATAATCTCGGTGCACAAGTTGCTAGACTTGATGGTTCCGAGGTTCTGTTGG 2366 Query 53807 TTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGG 53866 || |||||| |||| || ||||| || || || | || || || || |||||||| Sbjct 2365 TTGCTCTTTCTGTTGGCGGCGTCCTTGTAGAGCATATAAGGTGTTCCGGTCTCAATCTGA 2306 Query 53867 GATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGATTT---GTATCTCTTT 53923 || || | || | ||| | | | ||||| || | | | | || | | Sbjct 2305 GAGTCCAAGATGGAGAACCACAGATCCTGGGCCTTGATCGTCTTTCTGGCGAGTCCCGGT 2246 Query 53924 TCTCTTTCGTA-TAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCA-ATC 53981 |||||| | || | ||||| | |||||||| |||||||| || | || | | | Sbjct 2245 GTGGCTTCGTACTTGT-TGTACAACTGCTCAAACTCCTCTCCCCAGACCTCGTGGAGACC 2187 Query 53982 CAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAA 54041 | | | ||| | ||||| | || ||||| ||||| || |||| ||||| ||||||| Sbjct 2186 CTTGGC-TTCGTTGGGACAGAATAAGGACCAGTCTCCATCTTCCTCCACTCTCTTCATAA 2128 Query 54042 AGAGATCAGGAATCC 54056 | ||||| || |||| Sbjct 2127 ACAGATCGGGGATCC 2113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593702474742960