Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protostelium_20mycophagum_20[genbank_20GCA_5F002081555.1_202017-04- 06] 2,577 sequences; 39,717,957 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq1564 127 2e-24 seq1344 113 4e-20 seq1766 107 2e-18 seq593 105 6e-18 seq343 102 7e-17 seq1239 96.9 3e-15 seq1378 95.1 1e-14 seq2113 91.5 1e-13 seq2313 87.8 2e-12 >seq1564 Length=26684 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| |||| ||| | || |||| || | ||||||||||| |||||||| ||||| | Sbjct 11826 TTCCTCCTCTCAGACGAAGGACCAAGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCAG 11767 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 || || || ||||||| ||||| || || ||| ||||||||||||| ||||| || Sbjct 11766 AGAGAGTGCGGCCGTCCTCAAGCTGCTTTCCGGCAAAAATAAGTCTCTGTTGGTCGGGGG 11707 Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126 | | || |||||||| |||||| ||| || | | ||| |||||| | ||| Sbjct 11706 GGATTCCCTCCTTGTCTTGGATCTTGGCTTTTACGTTGTCGATGGTATCAGAGCTCTCGA 11647 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 || | ||| |||||||| || || || || ||||| || || |||||| Sbjct 11646 CCTCGAGGGTGATGGTCTTTCCAGTCAAAGTCTTGACGAAGATCTGCATT 11597 Score = 125 bits (138), Expect = 6e-24 Identities = 167/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 20945 GTTTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTC 21004 |||||| |||| || | |||||| | || | |||||||||||| || || || ||||| Sbjct 12056 GTTTCCTCCTCTGAGACGGAGCACAAGGTGAAGAGTGGACTCCTTCTGGATATTGTAGTC 11997 Query 21005 CGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCAC 21064 | || || || ||||||| ||||| || || || | || |||||||| ||||| Sbjct 11996 AGAGAGAGTGCGGCCGTCCTCGAGCTGCTTTCCAGCGAAGATGAGTCTCTGTTGGTCGGG 11937 Query 21065 GGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTC 21124 ||| | || |||||||| |||||| || || | | ||| || || || ||| Sbjct 11936 GGGGATTCCCTCCTTGTCTTGGATCTTAGCCTTGACGTTGTCGATGGTGTCGGAGGACTC 11877 Query 21125 CGTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 | ||||| || |||||||||||||| | || |||||||| ||||||||| Sbjct 11876 CACTTCCAAAGTGATGGTCTTGCCGGTGAGGGTCTTGACAAAGATTTGCATT 11825 >seq1344 Length=40060 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| |||| || | || |||| || | ||||||||||| |||||||| ||||| | Sbjct 23980 TTCCTCCTCTGAGACGAAGTACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCTG 24039 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 || || | | |||||||| || || || || | || |||||||| ||||| || Sbjct 24040 AGAGTGTGCGTCCATCCTCCAGTTGCTTTCCGGCGAAGATGAGTCTCTGTTGGTCGGGGG 24099 Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126 | | |||||||| || |||||| ||| || | | ||| ||| || | || Sbjct 24100 GAATTCCTTCCTTATCTTGGATCTTGGCTTTAACATTGTCGATAGTGTCTGAAGATTCGA 24159 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 ||||| ||| || ||||||||||| | ||||||||||| ||||||||| Sbjct 24160 CTTCCAAGGTGATTGTCTTGCCGGTGAGAGTTTTGACAAAGATTTGCATT 24209 >seq1766 Length=5059 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 20948 TCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGC 21007 ||| |||| || | || || | ||| | ||| |||||||| |||||||||||||| | Sbjct 4481 TCCTCCTCTCAAGCGAAGAACGAGATGAAGAGTAGACTCCTTCTGAATGTTATAGTCTGA 4540 Query 21008 CAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGG 21067 |||||| || ||||||| | || || || ||| |||| |||||||| || || ||| Sbjct 4541 GAGGGTTCGGCCGTCCTCTAATTGCTTTCCGGCAAAAATGAGTCTCTGTTGATCAGGGGG 4600 Query 21068 CACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGT 21127 | ||||||||||| |||||| ||| || | | ||| || || | ||| Sbjct 4601 AATTCCTTCCTTGTCTTGGATCTTGGCTTTTACATTGTCGATGGTGTCTGAGCTCTCTAC 4660 Query 21128 TTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 ||| | || || ||||| || || | || ||||| || ||||||||| Sbjct 4661 TTCGAGTGTGATTGTCTTTCCAGTGAGGGTCTTGACGAAGATTTGCATT 4709 >seq593 Length=28782 Score = 105 bits (116), Expect = 6e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 20978 AGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCC 21037 ||| || || || || ||||| ||||| | || ||| | ||||||| ||||| || || Sbjct 15453 AGTAGATTCTTTCTGGATGTTGTAGTCAGAAAGAGTTCTGCCGTCCTCAAGCTGCTTTCC 15512 Query 21038 CGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTT 21097 ||| |||| |||||||| ||||| || | ||||||||||| ||||| || Sbjct 15513 GGCAAAAATGAGTCTCTGTTGGTCGGGAGGGATTCCTTCCTTGTCTTGAATCTTGGCCTT 15572 Query 21098 CACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGT 21157 || | | ||| |||||| || || ||| | ||| |||||||||||||| | || Sbjct 15573 AACATTGTCGATAGTATCTGAGGATTCTACTTCTAAGGTGATGGTCTTGCCGGTGAGAGT 15632 Query 21158 TTTGACAAATATTTGCAT 21175 ||||||||| || ||||| Sbjct 15633 TTTGACAAAAATCTGCAT 15650 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| |||| || | || |||| ||| | ||| |||||||| |||||||||||||| | Sbjct 28431 TTCCTCCTCTGAGACGAAGAACCAGATGAAGAGTAGACTCCTTCTGAATGTTATAGTCTG 28490 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 |||||| || ||||||| | || || || || | || |||||||| || || || Sbjct 28491 AGAGGGTTCGGCCGTCCTCTAATTGCTTTCCGGCGAAGATGAGTCTCTGTTGATCAGGGG 28550 Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126 | | ||||||||||| ||||| ||| || | | ||| ||||| | ||| Sbjct 28551 GAATTCCTTCCTTGTCTTGTATCTTGGCTTTTACATTGTCGATGGTATCTGAGCTCTCTA 28610 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 ||| | || || ||||| || || | || ||||| || ||||||||| Sbjct 28611 CTTCGAGTGTGATTGTCTTTCCAGTGAGGGTCTTGACGAAGATTTGCATT 28660 Score = 82.4 bits (90), Expect = 6e-11 Identities = 141/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 20972 ATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTG 21031 ||| | ||| || ||||| || ||||| ||||| | ||| | ||||||| | || Sbjct 15903 ATGGAGAGTCGATTCCTTCTGGATGTTGTAGTCGCTTAAAGTTCTGCCGTCCTCTAATTG 15962 Query 21032 TTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTT 21091 || || || |||| ||||||||||| || || | || || ||||| |||||| Sbjct 15963 CTTTCCGGCGAAAATGAGTCTCTGCTGATCGGGTGGGATTCCCTCTTTGTCTTGGATCTT 16022 Query 21092 TTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGT 21151 ||| || | | ||| ||||| | ||| ||| | |||||| |||||||| || Sbjct 16023 GGCTTTGACATTGTCGATGGTATCTGAAGACTCGACTTCTAAGGTAATTGTCTTGCCAGT 16082 Query 21152 TAACGTTTTGACAAATATTTGCATT 21176 | |||||||| || ||||||||| Sbjct 16083 GAGAGTTTTGACGAAAATTTGCATT 16107 >seq343 Length=26413 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 20948 TCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGC 21007 ||| |||| || | || || | ||| | ||| |||||||| |||||||||||||| | Sbjct 303 TCCTCCTCTCAAGCGAAGAACGAGATGAAGAGTAGACTCCTTCTGAATGTTATAGTCTGA 244 Query 21008 CAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGG 21067 ||||| || | ||||| ||||| || || ||| |||| |||||||| || || || Sbjct 243 GAGGGTACGGCCATCCTCGAGCTGCTTTCCGGCAAAAATGAGTCTCTGTTGATCGGGTGG 184 Query 21068 CACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGT 21127 | |||||| ||||| ||||| ||| || | | ||| ||| || ||| Sbjct 183 GATGCCTTCTTTGTCTTGTATCTTGGCTTTTACGTTGTCGATAGTGTCTGAACTCTCTAC 124 Query 21128 TTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 ||| | ||| || ||||| || || || || ||||| || || |||||| Sbjct 123 TTCGAGGGTGATTGTCTTTCCAGTCAAAGTCTTGACGAAAATCTGCATT 75 >seq1239 Length=29077 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || ||||| | || | ||||| || | ||| |||||||| |||||||| || || | Sbjct 23116 CCTCCTCGTAATCTCAACACCAAGTGAAGAGTAGACTCCTTCTGAATGTTGTAATCTGAG 23175 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || | || |||| ||| || || ||| | || |||||||| ||||| || Sbjct 23176 AGAGTGCGGCCATCTTCCAACTGCTTTCCAGCAAAGATGAGTCTCTGTTGGTCGGGAGGG 23235 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||||||||| |||||| || || | | ||| || || | |||| Sbjct 23236 ATACCTTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATGGTGTCTGAGCTCTCCACC 23295 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 |||| || |||||||| ||||| | || |||||||| || |||||| Sbjct 23296 TCCAAAGTGATGGTCTTTCCGGTCAGGGTCTTGACAAAGATCTGCATT 23343 >seq1378 Length=10532 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 20972 ATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTG 21031 ||| || || |||||||| |||||||||||||| | ||||| || | ||||| ||||| Sbjct 10444 ATGTAATGTAGACTCCTTCTGAATGTTATAGTCTGAGAGGGTACGGCCATCCTCGAGCTG 10385 Query 21032 TTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTT 21091 || || ||| | || |||||||| ||||| ||| | ||||||||||| |||||| Sbjct 10384 CTTTCCGGCAAAGATGAGTCTCTGTTGGTCGGGGGGAATTCCTTCCTTGTCTTGGATCTT 10325 Query 21092 TTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGT 21151 || || | ||| || ||| | || || | ||| |||||||| ||||| Sbjct 10324 GGCCTTGACGTTATCGATGGTGTCAGATGATTCGACCTCTAAGGTGATGGTCTTTCCGGT 10265 Query 21152 TAACGTTTTGACAAATATTTGCATTTT 21178 | || || || || || ||||| || Sbjct 10264 GAGAGTCTTCACGAAGATCTGCATGTT 10238 >seq2113 Length=21246 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| |||| ||| | || || | || | |||||||||||| || || || ||||| Sbjct 20922 TTCCTCCTCTCAGACGAAGTACAAGGTGAAGAGTGGACTCCTTCTGGATATTGTAGTCGC 20863 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 || ||| ||||||| ||||| || || || |||| |||||||| ||||| || Sbjct 20862 TGAGAGTTCTACCGTCCTCAAGCTGCTTTCCGGCGAAAATGAGTCTCTGTTGGTCGGGGG 20803 Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126 | | || ||||| || ||||| ||||| | | ||| || || || ||| Sbjct 20802 GGATTCCCTCCTTATCTTGAATCTTGGCCTTCACATTGTCGATGGTGTCGGAGGACTCGA 20743 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 || | ||| |||||||| ||||| || || || || || ||||||||| Sbjct 20742 CCTCGAGGGTGATGGTCTTTCCGGTCAAAGTCTTCACGAAAATTTGCATT 20693 >seq2313 Length=44285 Score = 87.8 bits (96), Expect = 2e-12 Identities = 140/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 |||||||| || || ||||| ||||| |||||| | ||||||||||| || || Sbjct 27613 GTGGACTCTTTCTGTATGTTGTAGTCGCTGAGGGTTCTTCCATCCTCCAGCTGCTTTCCA 27554 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 || | || |||||||| ||||| ||| | || ||||| || |||||| || Sbjct 27553 GCGAAGATGAGTCTCTGTTGGTCTGGGGGTATTCCCTCCTTATCTTGGATCTTGGCCTTT 27494 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | ||| || || | ||| ||||| || |||||||| |||||||| || Sbjct 27493 ACATTGTCGATGGTGTCTGAGCTCTCGACTTCCAAAGTGATGGTCTTTCCGGTTAAAGTC 27434 Query 21159 TTGACAAATATTTGCATTTTG 21179 || ||||| || ||||| ||| Sbjct 27433 TTTACAAAAATCTGCATGTTG 27413 Score = 82.4 bits (90), Expect = 6e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 |||||||||||||||||||| ||||| |||||| ||||||| ||||| || || Sbjct 27841 GTGGACTCCTTTTGAATGTTGTAGTCGCTGAGGGTTCTTCCGTCCTCTAGCTGCTTTCCG 27782 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTT 21091 || | || |||||||| ||||| || | |||||||||||| |||||| Sbjct 27781 GCGAAGATGAGTCTCTGTTGGTCTGGTGGAATGCCTTCCTTGTCTTGGATCTT 27729 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422245938026132