Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protostelium_20mycophagum_20[genbank_20GCA_5F002081555.1_202017-04- 06] 2,577 sequences; 39,717,957 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq1766 109 8e-19 seq593 105 1e-17 >seq1766 Length=5059 Score = 109 bits (120), Expect = 8e-19 Identities = 121/159 (76%), Gaps = 2/159 (1%) Strand=Plus/Minus Query 124611 AATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATT 124670 ||| ||||| || || ||||| || || || || ||||| |||||||| || || ||| Sbjct 4864 AATGTAAAAGCCAAGATACAAGACAAGGAGGGAATCCCACCCGATCAACAGAGACTCATT 4805 Query 124671 TTTGCAGGAAAACAATTAGAGGATAGTCGAACA-TTAGAAGATTATAATATTCAAAAAGA 124729 || || ||||| |||||||||||| | || ||| |||| || || ||||||||||| || Sbjct 4804 TTCGCCGGAAAGCAATTAGAGGATGGACGCACACTTAGC-GACTACAATATTCAAAAGGA 4746 Query 124730 ATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||| | || || ||||||||| | |||| || || Sbjct 4745 GTCTACTCTCCACTTAGTTTTACGTCTCAGAGGAGGAAT 4707 Score = 104 bits (114), Expect = 4e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAA 124596 ||||||||| || | ||||| || || || || || || || | || | || ||| Sbjct 4709 AATGCAAATCTTCGTCAAGACCCTCACTGGAAAGACAATCACACTCGAAGTAGAGAGCTC 4650 Query 124597 ATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 | || || || ||| ||||| || || ||||| || ||||| || || ||||||| Sbjct 4649 A-GACACCATCGACAATGTAAAAGCCAAGATCCAAGACAAGGAAGGAATTCCCCCTGATC 4591 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 |||| || || |||||||| ||||| ||||||||||| | ||||| | ||| |||| Sbjct 4590 AACAGAGACTCATTTTTGCCGGAAAGCAATTAGAGGACGGCCGAACCCTCTCAGACTATA 4531 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG 124765 | ||||| || || || ||| | ||| | ||| | || || |||| || Sbjct 4530 ACATTCAGAAGGAGTCTACTCTTCATCTCGTTCTTCGCTTGAGAGGAGG 4482 >seq593 Length=28782 Score = 105 bits (116), Expect = 1e-17 Identities = 169/240 (70%), Gaps = 2/240 (1%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAA 124596 ||||||||| || | ||||| || || || || || || || | || | || ||| Sbjct 28660 AATGCAAATCTTCGTCAAGACCCTCACTGGAAAGACAATCACACTCGAAGTAGAGAGCTC 28601 Query 124597 ATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 | ||||| || ||| ||||| || || ||||| || ||||| || || ||||||| Sbjct 28600 A-GATACCATCGACAATGTAAAAGCCAAGATACAAGACAAGGAAGGAATTCCCCCTGATC 28542 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 |||| || || || || || ||||| ||||||||||| | ||||| | ||| |||| Sbjct 28541 AACAGAGACTCATCTTCGCCGGAAAGCAATTAGAGGACGGCCGAACCCTCTCAGACTATA 28482 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 | ||||| || || || ||| | ||| ||||| | ||| | |||| || || ||| || Sbjct 28481 ACATTCAGAAGGAGTCTACTCTTCATCTGGTTCTTCGTCTCAGAGGAGGAATGCAAATTT 28422 Score = 102 bits (112), Expect = 1e-16 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| || | || || || || ||||| || || || |||| | || | Sbjct 16107 AATGCAAATTTTCGTCAAAACTCTCACTGGCAAGACAATTACCTTAGAAGTCGAGTCTTC 16048 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| || ||| | ||| || || ||||| ||||| || || ||||| ||||| Sbjct 16047 AGATACCATCGACAATGTCAAAGCCAAGATCCAAGACAAAGAGGGAATCCCACCCGATCA 15988 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || || || ||||| || ||||| ||||||||||| | |||| ||| || || || Sbjct 15987 GCAGAGACTCATTTTCGCCGGAAAGCAATTAGAGGACGGCAGAACTTTAAGCGACTACAA 15928 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || || ||||| ||| | ||||| || |||||| | |||| || || Sbjct 15927 CATCCAGAAGGAATCGACTCTCCATTTAGTCTTACGTCTCAGAGGAGGAAT 15877 Score = 100 bits (110), Expect = 4e-16 Identities = 167/239 (70%), Gaps = 2/239 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 |||||||| || | ||||||||||| || || || || || | || | || || | Sbjct 16334 ATGCAAATCTTCGTTAAGACACTAACTGGAAAGACAATCACACTCGAAGTGGAGAGTTCA 16275 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || ||||| |||| |||| || || ||||| || ||||| || ||||| ||||| Sbjct 16274 -GACACAATCGATAATGTAAAGGCCAAGATCCAAGACAAGGAAGGAATCCCACCCGATCA 16216 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| || || || || || ||||| || || || || | || || || ||||| || Sbjct 16215 ACAGAGACTCATCTTCGCCGGAAAGCAGTTGGAAGACGGCCGCACTTTGAGCGATTACAA 16156 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 || || || || || ||| | |||||||| |||||| | ||||||| || ||| || Sbjct 16155 CATCCAGAAGGAGTCTACTCTCCATTTGGTATTACGTCTTAGAGGTGGAATGCAAATTT 16097 Score = 95.1 bits (104), Expect = 2e-14 Identities = 98/126 (78%), Gaps = 2/126 (2%) Strand=Plus/Minus Query 124644 ATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACA 124703 || ||||| |||||||| || || ||||| || ||||| |||||||||||| | || ||| Sbjct 28782 ATCCCACCCGATCAACAGAGACTCATTTTCGCCGGAAAGCAATTAGAGGATGGACGCACA 28723 Query 124704 -TTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGG 124762 |||| || || ||||||||||| || || ||| | || || ||||||||| | |||| Sbjct 28722 CTTAGC-GACTACAATATTCAAAAGGAGTCTACTCTCCACTTAGTTTTACGTCTCAGAGG 28664 Query 124763 TGGTAT 124768 || || Sbjct 28663 AGGAAT 28658 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755431664873600