Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protostelium_20mycophagum_20[genbank_20GCA_5F002081555.1_202017-04- 06] 2,577 sequences; 39,717,957 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq1564 149 7e-31 seq1239 105 8e-18 seq2313 100 3e-16 seq1378 100 3e-16 seq1344 98.7 1e-15 seq593 86.0 7e-12 seq1766 82.4 9e-11 >seq1564 Length=26684 Score = 149 bits (164), Expect = 7e-31 Identities = 187/253 (74%), Gaps = 3/253 (1%) Strand=Plus/Minus Query 42934 TATTATATT-TATTGTCCTATTGTCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTC 42992 |||||| || ||| |||| | ||||||||| | ||| | ||| | || | ||| | Sbjct 12076 TATTATTTTATATCAACCTAGTTTCCTCCTCTGAGACGGAGCACAAGGTGAAGAGTGGAC 12017 Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||| || |||||||| |||| ||||| || |||| || |||||||| |||||||| Sbjct 12016 TCCTTCTGGATATTGTAGTCAGAGAGAGTGCGGCCGTCCTCGAGCTGCTTTCCAGCGAAG 11957 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 ||||||| ||| ||||||| || | | ||||||||| ||| || |||| ||| Sbjct 11956 ATGAGTCTCTGTTGGTCGGGGGGGATTCCCTCCTTGTCTTGGATCTTAGCCTTGA-CGTT 11898 Query 43113 GCC-ACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | | |||||| || ||||| || | |||||||| ||||| || || ||||| || Sbjct 11897 GTCGATGGTGTCGGAGGACTCCACTTCCAAAGTGATGGTCTTGCCGGTGAGGGTCTTGAC 11838 Query 43172 AAAGATTTGCATT 43184 ||||||||||||| Sbjct 11837 AAAGATTTGCATT 11825 >seq1239 Length=29077 Score = 105 bits (116), Expect = 8e-18 Identities = 169/236 (72%), Gaps = 10/236 (4%) Strand=Plus/Plus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 ||||||||| || | |||||| | || | ||| ||| || || |||||||| || | Sbjct 23343 TCCTCCTCTCAATCTCAACACGAGGTGAAGGGTGGACTCTTTCTGGATATTGTAGTCTGA 23402 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 || |||| |||| || || ||||| || ||||| ||||||| || ||||||| || Sbjct 23403 GAGGGTCCTGCCGTCCTCGAGTTGCTTTCCGGCGAAAATGAGTCTTTGTTGGTCGGGAGG 23462 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCGTCGCC-ACCGTGTC---GCTCGAT 43130 | || |||||||||| ||| | || | |||| ||| | | | ||||| |||| Sbjct 23463 GATGCCCTCCTTGTCC-TGAATCTTGGCCTTGA-CGTTGTCGATGGTGTCTGAGCTC--- 23517 Query 43131 TCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186 ||||| || | |||||||| || || || | || ||||||||||| ||||| || Sbjct 23518 TCCACCTCCAAAGTGATGGTCTTTCCGGTCAATGTTTTTACAAAGATCTGCATGTT 23573 >seq2313 Length=44285 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 |||||||| | ||| | || | || | ||| |||||||||||| ||||| || Sbjct 27871 CCTCCTCTGAGACGAAGAACAAGGTGGAGCGTGGACTCCTTTTGAATGTTGTAGTCGCTG 27812 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || | |||| ||||||||||| || ||||| ||||||| ||| ||||| | || Sbjct 27811 AGGGTTCTTCCGTCCTCTAGCTGCTTTCCGGCGAAGATGAGTCTCTGTTGGTCTGGTGGA 27752 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCAC 43135 | || |||||||| ||| || |||| ||| | | | || || ||||| || Sbjct 27751 ATGCCTTCCTTGTCTTGGATCTTAGCCTTGA-CGTTGTCTATTGTATCTGAAGATTCAAC 27693 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 |||| ||||| || || || || || |||||||| ||||| |||||| Sbjct 27692 TTCGAGGGTGATTGTCTTTCCAGTGAGGGTCTTTACGAAGATCTGCATT 27644 >seq1378 Length=10532 Score = 100 bits (110), Expect = 3e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||||||||| | ||| || | ||| ||||| |||||| ||||| || || || | Sbjct 10467 CCTCCTCTTAATCTCAATACAAGATGTAATGTAGACTCCTTCTGAATGTTATAGTCTGAG 10408 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || || | || || |||||||| || || || ||||||| ||| ||||||| || Sbjct 10407 AGGGTACGGCCATCCTCGAGCTGCTTTCCGGCAAAGATGAGTCTCTGTTGGTCGGGGGGA 10348 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | | |||||||| ||| || |||| | | | ||||| ||||| || Sbjct 10347 ATTCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTATCGATGGTGTCAGATGATTCGACC 10288 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186 || | |||||||| || || || || ||||| || ||||| ||||| || Sbjct 10287 TCTAAGGTGATGGTCTTTCCGGTGAGAGTCTTCACGAAGATCTGCATGTT 10238 >seq1344 Length=40060 Score = 98.7 bits (108), Expect = 1e-15 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 ||||||||| | ||| | ||||| || | ||| |||||| ||||| ||||| || | Sbjct 23981 TCCTCCTCTGAGACGAAGTACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCTGA 24040 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 || || || | || || || ||||| || ||||| ||||||| ||| ||||||| || Sbjct 24041 GAGTGTGCGTCCATCCTCCAGTTGCTTTCCGGCGAAGATGAGTCTCTGTTGGTCGGGGGG 24100 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | | ||||| || ||| || ||| | | | | ||||| ||||| || Sbjct 24101 AATTCCTTCCTTATCTTGGATCTTGGCTTTAACATTGTCGATAGTGTCTGAAGATTCGAC 24160 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 || | ||||| || ||||| || || || || ||||||||||||||| Sbjct 24161 TTCCAAGGTGATTGTCTTGCCGGTGAGAGTTTTGACAAAGATTTGCATT 24209 >seq593 Length=28782 Score = 86.0 bits (94), Expect = 7e-12 Identities = 161/234 (69%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 42951 TATTGTCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAA 43010 |||||||||||||| | ||||| || | || | || || || || || ||||| Sbjct 15418 TATTGTCCTCCTCTAAGACGCAGGACAAGGTGAAGAGTAGATTCTTTCTGGATGTTGTAG 15477 Query 43011 TCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCG 43070 |||| ||||| | |||| || |||||||| || || || ||||||| ||| |||||| Sbjct 15478 TCAGAAAGAGTTCTGCCGTCCTCAAGCTGCTTTCCGGCAAAAATGAGTCTCTGTTGGTCG 15537 Query 43071 GCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGA 43129 | || | | ||||||| | ||| | || | | | | | | | | || || || Sbjct 15538 GGAGGGATTCCTTCCTTGT-CTTGAATCTTGGCCTTAACATTGTCGATAGTATCTGAGGA 15596 Query 43130 TTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||| || || | |||||||| ||||| || || || || ||||| || ||||| Sbjct 15597 TTCTACTTCTAAGGTGATGGTCTTGCCGGTGAGAGTTTTGACAAAAATCTGCAT 15650 >seq1766 Length=5059 Score = 82.4 bits (90), Expect = 9e-11 Identities = 161/237 (68%), Gaps = 6/237 (3%) Strand=Plus/Plus Query 42951 TATTGTCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAA 43010 |||||||||||||| || || | || | ||| | || |||||| ||||| || || Sbjct 4476 TATTGTCCTCCTCTCAAGCGAAGAACGAGATGAAGAGTAGACTCCTTCTGAATGTTATAG 4535 Query 43011 TCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCG 43070 || | || || || |||| |||| ||||| || || || ||||||| ||| || || Sbjct 4536 TCTGAGAGGGTTCGGCCGTCCTCTAATTGCTTTCCGGCAAAAATGAGTCTCTGTTGATCA 4595 Query 43071 GCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTC 43127 | || | | |||||||| ||| || ||| | | | | ||||| |||| Sbjct 4596 GGGGGAATTCCTTCCTTGTCTTGGATCTTGGCTTTTACATTGTCGATGGTGTCTGAGCTC 4655 Query 43128 GATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 || || |||| ||||| || || || || || ||||| || |||||||||||| Sbjct 4656 ---TCTACTTCGAGTGTGATTGTCTTTCCAGTGAGGGTCTTGACGAAGATTTGCATT 4709 Score = 82.4 bits (90), Expect = 9e-11 Identities = 158/232 (68%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 ||||||||| | ||| || || || || | || |||||||||||||||||| || Sbjct 4709 TCCTCCTCTGAGACGTAAAACTAAGTGGAGAGTAGACTCCTTTTGAATATTGTAGTCGCT 4768 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 || || || | || |||| ||||| || ||||| ||||||| ||| || |||| || Sbjct 4769 AAGTGTGCGTCCATCCTCTAATTGCTTTCCGGCGAAAATGAGTCTCTGTTGATCGGGTGG 4828 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTC 43132 | | ||||||||| || || ||| | | | | ||||| |||| || Sbjct 4829 GATTCCCTCCTTGTCTTGTATCTTGGCTTTTACATTGTCGATGGTGTCTGAGCTC---TC 4885 Query 43133 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 ||| |||| ||||| || || || || | ||||| || || || |||||| Sbjct 4886 CACTTCGAGGGTGATTGTCTTTCCAGTCAAAGTCTTAACGAAAATCTGCATT 4937 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571799180325560