Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protostelium_20mycophagum_20[genbank_20GCA_5F002081555.1_202017-04- 06] 2,577 sequences; 39,717,957 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq593 107 3e-18 seq1766 98.7 1e-15 seq1378 86.0 9e-12 seq1239 86.0 9e-12 >seq593 Length=28782 Score = 107 bits (118), Expect = 3e-18 Identities = 158/232 (68%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 ||||||||||||| | |||||||||||| | |||||| || || || || ||||| Sbjct 16106 TTCCACCTCTAAGACGTAATACCAAATGGAGAGTAGACTCCTTCTGGATGTTGTAATCGC 16165 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | ||| | || || || || || ||||| || || || | ||| || ||||| || | Sbjct 16166 TCAAAGTGCGGCCGTCTTCCAACTGCTTTCCGGCGAAGATGAGTCTCTGTTGATCGGGTG 16225 Query 146169 GAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTA 146228 | |||||||| || ||||| || |||||||| || | Sbjct 16226 GGATTCCTTCCTTGTCTTGGATCTTGGCCTTTACATTATCGATTGTGTCTGAACTCTCCA 16285 Query 146229 CTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATTTT 146280 |||| ||||||||||| || || |||| ||| |||| ||| |||||||| || Sbjct 16286 CTTCGAGTGTGATTGTCTTTCCAGTTAGTGTCTTAACGAAGATTTGCATGTT 16337 Score = 104 bits (114), Expect = 3e-17 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||| ||||| || | | |||| ||| | |||||| || || || ||||| |||| Sbjct 28431 TTCCTCCTCTGAGACGAAGAACCAGATGAAGAGTAGACTCCTTCTGAATGTTATAGTCTG 28490 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | || |||| || || |||||||| ||||| || || || | ||| || ||||| || | Sbjct 28491 AGAGGGTTCGGCCGTCCTCTAATTGCTTTCCGGCGAAGATGAGTCTCTGTTGATCAGGGG 28550 Query 146169 GAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTA 146228 |||||||||| || ||||| |||||||| || |||| Sbjct 28551 GAATTCCTTCCTTGTCTTGTATCTTGGCTTTTACATTGTCGATGGTATCTGAGCTCTCTA 28610 Query 146229 CTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATT 146278 |||| ||||||||||| || || || | || || | ||| ||||||||| Sbjct 28611 CTTCGAGTGTGATTGTCTTTCCAGTGAGGGTCTTGACGAAGATTTGCATT 28660 Score = 87.8 bits (96), Expect = 3e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 146050 TCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGA 146109 ||| |||||||| | | || | || | |||||||||||| || || || || || Sbjct 15423 TCCTCCTCTAAGACGCAGGACAAGGTGAAGAGTAGATTCTTTCTGGATGTTGTAGTCAGA 15482 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 ||||||||||| || || | || ||||| |||||||| | ||| || || || ||||| Sbjct 15483 AAGAGTTCTGCCGTCCTCAAGCTGCTTTCCGGCAAAAATGAGTCTCTGTTGGTCGGGAGG 15542 Query 146170 AATTCCTTCTTTATCTTG 146187 |||||||| || ||||| Sbjct 15543 GATTCCTTCCTTGTCTTG 15560 >seq1766 Length=5059 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/205 (68%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 146074 ATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTG 146133 ||| | |||||| || || || ||||| ||||| || |||| || || |||||||| Sbjct 4505 ATGAAGAGTAGACTCCTTCTGAATGTTATAGTCTGAGAGGGTTCGGCCGTCCTCTAATTG 4564 Query 146134 TTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTGNNNNNN 146193 ||||| |||||||| | ||| || ||||| || ||||||||||| || ||||| Sbjct 4565 CTTTCCGGCAAAAATGAGTCTCTGTTGATCAGGGGGAATTCCTTCCTTGTCTTGGATCTT 4624 Query 146194 NNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACTTCTAGTGTGATTGTTTTACCTGT 146253 || ||||| || |||||||| ||||||||||| || || || Sbjct 4625 GGCTTTTACATTGTCGATGGTGTCTGAGCTCTCTACTTCGAGTGTGATTGTCTTTCCAGT 4684 Query 146254 TAATGTTTTAATGAATATTTGCATT 146278 | || || | ||| ||||||||| Sbjct 4685 GAGGGTCTTGACGAAGATTTGCATT 4709 >seq1378 Length=10532 Score = 86.0 bits (94), Expect = 9e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || ||||| | ||| ||||| | |||||| ||||| || || || ||||| ||||| Sbjct 10467 CCTCCTCTTAATCTCAATACAAGATGTAATGTAGACTCCTTCTGAATGTTATAGTCTGAG 10408 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || || | || ||| || | || ||||| ||||| || | ||| || || || || ||| Sbjct 10407 AGGGTACGGCCATCCTCGAGCTGCTTTCCGGCAAAGATGAGTCTCTGTTGGTCGGGGGGA 10348 Query 146171 ATTCCTTCTTTATCTTG 146187 |||||||| || ||||| Sbjct 10347 ATTCCTTCCTTGTCTTG 10331 >seq1239 Length=29077 Score = 86.0 bits (94), Expect = 9e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || |||| | ||| || ||||| || | |||||| || || || || |||||||| Sbjct 23116 CCTCCTCGTAATCTCAACACCAAGTGAAGAGTAGACTCCTTCTGAATGTTGTAATCTGAG 23175 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||| | || ||| || || || ||||||||||| || | ||| || || || ||||| Sbjct 23176 AGAGTGCGGCCATCTTCCAACTGCTTTCCAGCAAAGATGAGTCTCTGTTGGTCGGGAGGG 23235 Query 146171 ATTCCTTCTTTATCTTG 146187 || ||||| || ||||| Sbjct 23236 ATACCTTCCTTGTCTTG 23252 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743502449155840