Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protostelium_20mycophagum_20[genbank_20GCA_5F002081555.1_202017-04- 06] 2,577 sequences; 39,717,957 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq593 132 3e-26 seq1564 113 3e-20 seq1378 105 4e-18 seq1344 105 4e-18 seq2313 93.3 3e-14 seq1239 93.3 3e-14 seq1044 93.3 3e-14 seq2113 89.7 3e-13 seq1024 84.2 1e-11 >seq593 Length=28782 Score = 132 bits (146), Expect = 3e-26 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 34177 CAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTC 34236 ||| || ||||| | |||| ||||||||| ||||||||||| || || | | |||| Sbjct 15438 CAGGACAAGGTGAAGAGTAGATTCTTTCTGGATGTTGTAGTCAGAAAGAGTTCTGCCGTC 15497 Query 34237 GTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTC 34296 || | |||||| || || |||||||| | ||| |||||| || | | |||||||| Sbjct 15498 CTCAAGCTGCTTTCCGGCAAAAATGAGTCTCTGTTGGTCGGGAGGGATTCCTTCCTTGTC 15557 Query 34297 GGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 ||||| ||| | || | | || | ||| | ||||| || || | |||||||| Sbjct 15558 TTGAATCTTGGCCTTAACATTGTCGATAGTATCTGAGGATTCTACTTCTAAGGTGATGGT 15617 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGCTC 34394 ||||||||||||||||| ||||| ||||||||| ||| Sbjct 15618 CTTGCCGGTGAGAGTTTTGACAAAAATCTGCATCCCTC 15655 Score = 87.8 bits (96), Expect = 1e-12 Identities = 139/195 (71%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 34198 TTCTTTCTGTATGTTGTAGTCGG--ACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCG 34255 ||| ||||| |||||||||||| | || | | | |||| || || ||||| || ||| Sbjct 15915 TTCCTTCTGGATGTTGTAGTCGCTTAAAGTT--CTGCCGTCCTCTAATTGCTTTCCGGCG 15972 Query 34256 AAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AG 34314 |||||||| | |||||| ||| || | | ||| ||||| ||| || ||||| | Sbjct 15973 AAAATGAGTCTCTGCTGATCGGGTGGGATTCCCTCTTTGTCTTGGATC-TTGGCTTTGAC 16031 Query 34315 ATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTT 34374 || | | || | ||| | || ||||| || | || || || ||||| ||||||||||| Sbjct 16032 ATTGTCGATGGTATCTGAAGACTCGACTTCTAAGGTAATTGTCTTGCCAGTGAGAGTTTT 16091 Query 34375 CACAAAGATCTGCAT 34389 || || || ||||| Sbjct 16092 GACGAAAATTTGCAT 16106 >seq1564 Length=26684 Score = 113 bits (124), Expect = 3e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||| ||||| | ||| || ||||| || |||||||| || || ||| |||| Sbjct 12037 AGCACAAGGTGAAGAGTGGACTCCTTCTGGATATTGTAGTCAGAGAGAGTGCGGCCGTCC 11978 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | |||||| || ||||| ||||| | ||| |||||| ||| | | ||||||||| Sbjct 11977 TCGAGCTGCTTTCCAGCGAAGATGAGTCTCTGTTGGTCGGGGGGGATTCCCTCCTTGTCT 11918 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | | | | || | |||| || || || |||| |||||||| Sbjct 11917 TGGATCTTAGCCTTGACGTTGTCGATGGTGTCGGAGGACTCCACTTCCAAAGTGATGGTC 11858 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||||||||| || || |||||||| ||||| Sbjct 11857 TTGCCGGTGAGGGTCTTGACAAAGATTTGCAT 11826 Score = 84.2 bits (92), Expect = 1e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| ||||||||||| || || ||| |||| || | |||||| || || ||| Sbjct 11788 TCCTTCTGAATGTTGTAGTCAGAGAGAGTGCGGCCGTCCTCAAGCTGCTTTCCGGCAAAA 11729 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 || || | ||| |||||| ||| | | ||||||||| ||||| |||| | | Sbjct 11728 ATAAGTCTCTGTTGGTCGGGGGGGATTCCCTCCTTGTCTTGGATCTTGGCTTTTACGTTG 11669 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || | ||| | ||||| || | |||||||| || || || | ||| || || Sbjct 11668 TCGATGGTATCAGAGCTCTCGACCTCGAGGGTGATGGTCTTTCCAGTCAAAGTCTTGACG 11609 Query 34379 AAGATCTGCAT 34389 ||||||||||| Sbjct 11608 AAGATCTGCAT 11598 >seq1378 Length=10532 Score = 105 bits (116), Expect = 4e-18 Identities = 161/228 (71%), Gaps = 1/228 (0%) Strand=Plus/Minus Query 34175 CTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCG 34234 |||| || || ||||| ||| || ||||| ||||| ||||| || || |||| | Sbjct 10455 CTCAATACAAGATGTAATGTAGACTCCTTCTGAATGTTATAGTCTGAGAGGGTACGGCCA 10396 Query 34235 TCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTG 34294 || || | |||||| || || || ||||| | ||| |||||| ||| | | |||||| Sbjct 10395 TCCTCGAGCTGCTTTCCGGCAAAGATGAGTCTCTGTTGGTCGGGGGGAATTCCTTCCTTG 10336 Query 34295 TCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATG 34354 || ||||| ||| | | | || | || | |||||||| || | |||||| Sbjct 10335 TCTTGGATCTTGGCCTTGACGTTATCGATGGTGTCAGATGATTCGACCTCTAAGGTGATG 10276 Query 34355 GTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGCTCGAATGGTG 34402 || || ||||||||||| ||||| ||||||||||| | || | ||||| Sbjct 10275 GTCTTTCCGGTGAGAGTCTTCACGAAGATCTGCAT-GTTCTATTGGTG 10229 >seq1344 Length=40060 Score = 105 bits (116), Expect = 4e-18 Identities = 140/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| ||||||||||| || || || | || |||| ||||| || ||||| Sbjct 24018 TCCTTCTGAATGTTGTAGTCTGAGAGTGTGCGTCCATCCTCCAGTTGCTTTCCGGCGAAG 24077 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATC 34317 ||||| | ||| |||||| ||| | | ||||| || ||| || ||||| | || Sbjct 24078 ATGAGTCTCTGTTGGTCGGGGGGAATTCCTTCCTTATCTTGGATC-TTGGCTTTAACATT 24136 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | | || | || | |||||||| |||| ||||| || ||||||||||||||||| || Sbjct 24137 GTCGATAGTGTCTGAAGATTCGACTTCCAAGGTGATTGTCTTGCCGGTGAGAGTTTTGAC 24196 Query 34378 AAAGATCTGCAT 34389 |||||| ||||| Sbjct 24197 AAAGATTTGCAT 24208 >seq2313 Length=44285 Score = 93.3 bits (102), Expect = 3e-14 Identities = 138/196 (70%), Gaps = 10/196 (5%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGT-----CGTCGTCCAACTGCTTGCCTG 34253 |||||||||||||||||||| ||||| ||| | || |||| |||||| || | Sbjct 27607 TCTTTCTGTATGTTGTAGTC-----GCTGAGGGTTCTTCCATCCTCCAGCTGCTTTCCAG 27553 Query 34254 CGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTA 34313 |||| ||||| | ||| ||||| ||| | | |||||| || ||||| ||||| Sbjct 27552 CGAAGATGAGTCTCTGTTGGTCTGGGGGTATTCCCTCCTTATCTTGGATCTTGGCCTTTA 27493 Query 34314 GATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTT 34373 || | | || | || | ||||| |||| |||||||| || ||||| | ||| | Sbjct 27492 CATTGTCGATGGTGTCTGAGCTCTCGACTTCCAAAGTGATGGTCTTTCCGGTTAAAGTCT 27433 Query 34374 TCACAAAGATCTGCAT 34389 | ||||| |||||||| Sbjct 27432 TTACAAAAATCTGCAT 27417 >seq1239 Length=29077 Score = 93.3 bits (102), Expect = 3e-14 Identities = 170/248 (69%), Gaps = 2/248 (1%) Strand=Plus/Plus Query 34144 GTTGCAGATT--TCGTCGAATCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCT 34201 ||||||| || |||| | || || || | |||| ||||| ||| | |||| || Sbjct 23095 GTTGCAGTTTCTTCGTTGGCACCTCCTCGTAATCTCAACACCAAGTGAAGAGTAGACTCC 23154 Query 34202 TTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATG 34261 ||||| |||||||| || || || ||| | || ||||||||||| || || || ||| Sbjct 23155 TTCTGAATGTTGTAATCTGAGAGAGTGCGGCCATCTTCCAACTGCTTTCCAGCAAAGATG 23214 Query 34262 AGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCT 34321 || | ||| |||||| || | | |||||||| ||||| ||| | | | | Sbjct 23215 AGTCTCTGTTGGTCGGGAGGGATACCTTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCG 23274 Query 34322 ATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAG 34381 || | || | || || |||| |||||||| || ||||| || || || |||||| Sbjct 23275 ATGGTGTCTGAGCTCTCCACCTCCAAAGTGATGGTCTTTCCGGTCAGGGTCTTGACAAAG 23334 Query 34382 ATCTGCAT 34389 |||||||| Sbjct 23335 ATCTGCAT 23342 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || | || |||| ||| ||||| | || |||||||| || |||||||| || Sbjct 23343 TCCTCCTCTCAATCTCAACACGAGGTGAAGGGTGGACTCTTTCTGGATATTGTAGTCTGA 23402 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 || | | |||| || | ||||| || ||||||||||| | || |||||| || Sbjct 23403 GAGGGTCCTGCCGTCCTCGAGTTGCTTTCCGGCGAAAATGAGTCTTTGTTGGTCGGGAGG 23462 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || ||||||||| ||||| ||| | | | | || | || | || || Sbjct 23463 GATGCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCGATGGTGTCTGAGCTCTCCAC 23522 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| |||||||| || ||||| | ||||| |||||||||||||| Sbjct 23523 CTCCAAAGTGATGGTCTTTCCGGTCAATGTTTTTACAAAGATCTGCAT 23570 >seq1044 Length=18651 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 34181 ACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCC 34240 |||| ||| | ||| |||||||||||||||||||| ||| || | || ||| Sbjct 18577 ACCAAGTGAAGGGTAGACTCTTTCTGTATGTTGTAGTCACTCAGTGTGCGTCCATCTTCC 18518 Query 34241 AACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCT 34300 | ||||| || ||||| ||||| | ||| |||||| || | | ||||||||| | Sbjct 18517 AGTTGCTTTCCAGCGAAGATGAGTCTCTGTTGGTCGGGTGGGATTCCCTCCTTGTCTTGT 18458 Query 34301 ATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTG 34360 ||||| |||| || | || | ||| | ||||| |||| ||||| || ||| Sbjct 18457 ATCTTGGCTTTTACATTATCGATGGTATCTGAACTCTCGACTTCCAATGTGATTGTCTTG 18398 Query 34361 CCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||||||| || || || ||||| ||||| Sbjct 18397 CCGGTGAGTGTCTTTACGAAGATTTGCAT 18369 >seq2113 Length=21246 Score = 89.7 bits (98), Expect = 3e-13 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCG-- 34219 ||| || | ||| | || || ||||| | ||| || ||||| || ||||||||| Sbjct 20921 TCCTCCTCTCAGACGAAGTACAAGGTGAAGAGTGGACTCCTTCTGGATATTGTAGTCGCT 20862 Query 34220 GACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACG 34279 || || | | |||| || | |||||| || ||||||||||| | ||| |||||| | Sbjct 20861 GAGAGTT--CTACCGTCCTCAAGCTGCTTTCCGGCGAAAATGAGTCTCTGTTGGTCGGGG 20804 Query 34280 GGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCG 34339 || | | |||||| || ||||| ||| | || | | || | |||| || ||| Sbjct 20803 GGGATTCCCTCCTTATCTTGAATCTTGGCCTTCACATTGTCGATGGTGTCGGAGGACTCG 20744 Query 34340 ACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || || | |||||||| || ||||| | ||| ||||| || || ||||| Sbjct 20743 ACCTCGAGGGTGATGGTCTTTCCGGTCAAAGTCTTCACGAAAATTTGCAT 20694 >seq1024 Length=14032 Score = 84.2 bits (92), Expect = 1e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 34181 ACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCC 34240 |||| ||| | ||| ||| ||||| ||||| |||||| || | | |||| ||| Sbjct 13989 ACCAAGTGGAGAGTCGATTCCTTCTGGATGTTATAGTCGCTCAAAGTTCTGCCGTCTTCC 13930 Query 34241 AACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCT 34300 |||||||| || ||||| ||||| | ||| |||||| || | | ||| ||||| Sbjct 13929 AACTGCTTTCCGGCGAAGATGAGTCTCTGTTGGTCGGGTGGGATTCCCTCTTTGTCTTGG 13870 Query 34301 ATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTT 34359 ||| || ||||| | || | | || | ||| | || ||||| || | || || || || Sbjct 13869 ATC-TTGGCTTTGACATTGTCGATGGTATCTGAAGACTCGACCTCAAGTGTAATTGTCTT 13811 Query 34360 GCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || ||||| || || || ||||| ||||| Sbjct 13810 TCCTGTGAGTGTCTTTACGAAGATTTGCAT 13781 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323061853217120