Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protostelium_20mycophagum_20[genbank_20GCA_5F002081555.1_202017-04- 06] 2,577 sequences; 39,717,957 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq1239 122 7e-23 seq1044 118 8e-22 seq1344 113 4e-20 seq593 113 4e-20 seq2113 104 2e-17 seq1564 102 6e-17 seq1024 102 6e-17 seq2509 98.7 8e-16 seq1766 95.1 1e-14 seq717 89.7 4e-13 >seq1239 Length=29077 Score = 122 bits (134), Expect = 7e-23 Identities = 168/233 (72%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 || ||||||||||| || || | ||| || ||| ||| ||||| || |||||||| | Sbjct 23344 CCTCCTCTCAATCTCAACACGAGGTGAAGGGTGGACTCTTTCTGGATATTGTAGTC--TG 23401 Query 45170 AGTTGGCGAT--CGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAG 45227 || || | |||| || ||||| ||||||||||| || | | ||||||||||||| Sbjct 23402 AGAGGGTCCTGCCGTCCTCGAGTTGCTTTCCGGCGAAAATGAGTCTTTGTTGGTCGGGAG 23461 Query 45228 GCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCA 45287 | | |||||||||||| ||| || ||| || | | | |||| | ||||| Sbjct 23462 GGATGCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCGATGGTGTCTGAGCTCTCCA 23521 Query 45288 CCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTTG 45340 |||||| || || ||||| || |||| || || |||||||| ||||||||| Sbjct 23522 CCTCCAAAGTGATGGTCTTTCCGGTCAATGTTTTTACAAAGATCTGCATGTTG 23574 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 || |||| ||||| || |||||||| || || |||||||||||||||||| || Sbjct 23116 CCTCCTCGTAATCTCAACACCAAGTGAAGAGTAGACTCCTTCTGAATGTTGTAATCTGAG 23175 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || ||| | || |||| || ||||| || || || | | ||||||||||||||| Sbjct 23176 AGAGTGCGGCCATCTTCCAACTGCTTTCCAGCAAAGATGAGTCTCTGTTGGTCGGGAGGG 23235 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | ||| |||||||| || || ||| || | | | |||| | ||||||| Sbjct 23236 ATACCTTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATGGTGTCTGAGCTCTCCACC 23295 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| || || ||||| || ||||| ||||| |||||||| ||||| Sbjct 23296 TCCAAAGTGATGGTCTTTCCGGTCAGGGTCTTGACAAAGATCTGCAT 23342 >seq1044 Length=18651 Score = 118 bits (130), Expect = 8e-22 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 45127 TACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTC 45186 ||||||||| || || ||| ||||| ||||||||||| ||||| ||| | || || Sbjct 18578 TACCAAGTGAAGGGTAGACTCTTTCTGTATGTTGTAGTCACTCAGTGTGCGTCCATCTTC 18519 Query 45187 CAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGC 45246 |||||| ||||| ||||| || | | |||||||||||| || | ||||||||||| Sbjct 18518 CAGTTGCTTTCCAGCGAAGATGAGTCTCTGTTGGTCGGGTGGGATTCCCTCCTTGTCTTG 18459 Query 45247 AATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTT 45306 || || || || | | | | || || ||| || |||| || || ||||| Sbjct 18458 TATCTTGGCTTTTACATTATCGATGGTATCTGAACTCTCGACTTCCAATGTGATTGTCTT 18399 Query 45307 GCCCGTCAGAGTCTTCACAAAGATTTGCATGTTGC 45341 ||| || || ||||| || |||||||||||||||| Sbjct 18398 GCCGGTGAGTGTCTTTACGAAGATTTGCATGTTGC 18364 >seq1344 Length=40060 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 45127 TACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTC 45186 ||||||||| || ||| ||||||||||||||||||||| ||| ||| | || || Sbjct 23999 TACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCTGAGAGTGTGCGTCCATCCTC 24058 Query 45187 CAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGC 45246 |||||| ||||||||||| || | | |||||||||||| || | || ||||| || Sbjct 24059 CAGTTGCTTTCCGGCGAAGATGAGTCTCTGTTGGTCGGGGGGAATTCCTTCCTTATCTTG 24118 Query 45247 AATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTT 45306 || || ||||| | | |||| | || || |||| ||| || ||||| Sbjct 24119 GATCTTGGCTTTAACATTGTCGATAGTGTCTGAAGATTCGACTTCCAAGGTGATTGTCTT 24178 Query 45307 GCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||| || ||||| || |||||||||||||| Sbjct 24179 GCCGGTGAGAGTTTTGACAAAGATTTGCAT 24208 Score = 104 bits (114), Expect = 2e-17 Identities = 158/225 (70%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 || ||||| | | ||| || ||||| |||||| ||||||||| ||||| ||||| Sbjct 24210 CCTCCTCTGAGACGTAAAACTAAGTGGAGCGTGGACTCCTTCTGGATGTTATAGTCAGAG 24269 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || || |||| || ||||| ||||||||||| || | | |||||||||||| || Sbjct 24270 AGAGTACGTCCGTCCTCGAGTTGCTTTCCGGCGAAAATGAGTCTCTGTTGGTCGGGGGGG 24329 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | ||||||||||| |||||| ||| || | | | |||| | || || Sbjct 24330 ATTCCCTCCTTGTCTTGAATTTTAGCCTTGACGTTGTCGATGGTGTCTGAAGATTCTACT 24389 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGC 45334 || | ||| || ||||| || || || ||||| || ||||||||| Sbjct 24390 TCGAGGGTGATTGTCTTTCCTGTAAGTGTCTTTACGAAGATTTGC 24434 >seq593 Length=28782 Score = 113 bits (124), Expect = 4e-20 Identities = 164/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||| | | ||||||||| || || || ||||||||| |||||||| ||| || Sbjct 16108 CCACCTCTAAGACGTAATACCAAATGGAGAGTAGACTCCTTCTGGATGTTGTAATCGCTC 16167 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 | ||| |||| |||| || ||||||||||| || | | |||||| ||||| || Sbjct 16168 AAAGTGCGGCCGTCTTCCAACTGCTTTCCGGCGAAGATGAGTCTCTGTTGATCGGGTGGG 16227 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | || |||||||| || || ||| || | | |||| || |||||| Sbjct 16228 ATTCCTTCCTTGTCTTGGATCTTGGCCTTTACATTATCGATTGTGTCTGAACTCTCCACT 16287 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTTGC 45341 || | || || ||||| || || || ||||| || |||||||||||||||| Sbjct 16288 TCGAGTGTGATTGTCTTTCCAGTTAGTGTCTTAACGAAGATTTGCATGTTGC 16339 >seq2113 Length=21246 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 || ||||||| | | ||| | ||| || ||| ||||||||| || ||||||||| | Sbjct 20920 CCTCCTCTCAGACGAAGTACAAGGTGAAGAGTGGACTCCTTCTGGATATTGTAGTCGCTG 20861 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || | | |||| || || || ||||||||||| || | | |||||||||||| || Sbjct 20860 AGAGTTCTACCGTCCTCAAGCTGCTTTCCGGCGAAAATGAGTCTCTGTTGGTCGGGGGGG 20801 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | |||||||| || ||| || ||| || | | | |||| ||| ||| Sbjct 20800 ATTCCCTCCTTATCTTGAATCTTGGCCTTCACATTGTCGATGGTGTCGGAGGACTCGACC 20741 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || | ||| || ||||| || |||| ||||||||| || |||||||| Sbjct 20740 TCGAGGGTGATGGTCTTTCCGGTCAAAGTCTTCACGAAAATTTGCAT 20694 Score = 84.2 bits (92), Expect = 2e-11 Identities = 143/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| || ||| ||||||||| || |||||||| || || |||| || ||||| Sbjct 21125 GTGAAGAGTGGACTCCTTCTGGATATTGTAGTCAGAGAGAGTACGTCCGTCCTCGAGTTG 21066 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 ||||||||||| ||||| | ||||| || || || | ||||||||||| | | | Sbjct 21065 CTTTCCGGCGAAGATCAATCTTTGTTGATCAGGGGGAATTCCCTCCTTGTCTTGGA-TCT 21007 Query 45253 TTGCTTAACCGCCG-CCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCG 45311 | |||| || | | | | |||| | ||| ||||| | ||| || ||||| || | Sbjct 21006 TCGCTTTTACGTTGTCGATGGTGTCAGAGCTCTCGACCTCGAGGGTGATAGTCTTTCCGG 20947 Query 45312 TCAGAGTCTTCACAAAGATTTGCAT 45336 | || ||||| || ||||| ||||| Sbjct 20946 TGAGGGTCTTGACGAAGATCTGCAT 20922 >seq1564 Length=26684 Score = 102 bits (112), Expect = 6e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 || ||||||| | | |||||||| || ||| ||||||||||||||||||||| Sbjct 11824 CCTCCTCTCAGACGAAGGACCAAGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCAGAG 11765 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || ||| |||| || || || |||||||| || || | | |||||||||||| || Sbjct 11764 AGAGTGCGGCCGTCCTCAAGCTGCTTTCCGGCAAAAATAAGTCTCTGTTGGTCGGGGGGG 11705 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCG-CCACGCTGTCCCCACCCTCCAC 45288 | ||||||||||| | | || |||| || | | | | | || | ||| || Sbjct 11704 ATTCCCTCCTTGTCTTGGA-TCTTGGCTTTTACGTTGTCGATGGTATCAGAGCTCTCGAC 11646 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||| | ||| || ||||| || |||| |||||| || ||||| ||||| Sbjct 11645 CTCGAGGGTGATGGTCTTTCCAGTCAAAGTCTTGACGAAGATCTGCAT 11598 >seq1024 Length=14032 Score = 102 bits (112), Expect = 6e-17 Identities = 164/234 (70%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 || ||||| | | |||||||||||| || || |||||||| ||||| |||||| || Sbjct 14007 CCTCCTCTAAGACGTAATACCAAGTGGAGAGTCGATTCCTTCTGGATGTTATAGTCGCTC 13948 Query 45170 A--GTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAG 45227 | ||| | |||| |||| || ||||||||||| || | | |||||||||||| | Sbjct 13947 AAAGTT--CTGCCGTCTTCCAACTGCTTTCCGGCGAAGATGAGTCTCTGTTGGTCGGGTG 13890 Query 45228 GCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCA 45287 | | ||||| ||||| || || || || | | | | || | ||| | Sbjct 13889 GGATTCCCTCTTTGTCTTGGATCTTGGCTTTGACATTGTCGATGGTATCTGAAGACTCGA 13830 Query 45288 CCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTTGC 45341 |||| | ||||| ||||| || || || ||||| || |||||||||||||||| Sbjct 13829 CCTCAAGTGTAATTGTCTTTCCTGTGAGTGTCTTTACGAAGATTTGCATGTTGC 13776 >seq2509 Length=21747 Score = 98.7 bits (108), Expect = 8e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||| | | ||| | || | ||| || ||| ||||||||| ||||||||||| Sbjct 12878 CCACCACGAAGTCTGAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAA 12937 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || ||| |||| || ||||| ||||||||||| ||||| | |||||||||||| || Sbjct 12938 AGAGTGCGTCCGTCTTCGAGTTGCTTTCCGGCGAAGATCAATCTCTGTTGGTCGGGGGGG 12997 Query 45230 ACACCCTCCTTGTC 45243 | |||||||||||| Sbjct 12998 ATACCCTCCTTGTC 13011 >seq1766 Length=5059 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 || ||||| | | ||| || ||||| || || |||||| ||||| ||||||||| | Sbjct 4710 CCTCCTCTGAGACGTAAAACTAAGTGGAGAGTAGACTCCTTTTGAATATTGTAGTCGCTA 4769 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 ||| ||| | || || | ||| ||||||||||| || | | |||||| ||||| || Sbjct 4770 AGTGTGCGTCCATCCTCTAATTGCTTTCCGGCGAAAATGAGTCTCTGTTGATCGGGTGGG 4829 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | ||||||||||| || || || || | | | |||| | |||||| Sbjct 4830 ATTCCCTCCTTGTCTTGTATCTTGGCTTTTACATTGTCGATGGTGTCTGAGCTCTCCACT 4889 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || | ||| || ||||| || |||| |||||| || || || ||||| Sbjct 4890 TCGAGGGTGATTGTCTTTCCAGTCAAAGTCTTAACGAAAATCTGCAT 4936 >seq717 Length=13837 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| || ||| ||| || || |||||||||||| || ||| | || || | || Sbjct 187 GTGGAGGGTGGACTCTTTTTGGATGTTGTAGTCGGAGAGGGTGCGCCCATCCTCTAACTG 246 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 ||||||||||| ||||| | |||||| |||||||| | || |||||||| ||| || Sbjct 247 CTTTCCGGCGAAGATCAATCTCTGTTGATCGGGAGGGATTCCTTCCTTGTCTTGAATCTT 306 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | | |||| ||| || |||| ||||| ||||| || || Sbjct 307 GGCCTTGACGTTATCGATGGTGTCGGAGGACTCTACTTCCAAAGTAATAGTCTTTCCTGT 366 Query 45313 CAGAGTCTTCACAAAGATTTGCATGTTGC 45341 || ||||| || || || |||||||||| Sbjct 367 GAGGGTCTTTACGAAAATCTGCATGTTGC 395 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395062791799117