Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protostelium_20mycophagum_20[genbank_20GCA_5F002081555.1_202017-04- 06] 2,577 sequences; 39,717,957 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq1344 102 6e-17 seq2313 84.2 2e-11 >seq1344 Length=40060 Score = 102 bits (112), Expect = 6e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||| | || | |||||||| |||||| || || || || |||||||||||||| | Sbjct 23981 TCCTCCTCTGAGACGAAGTACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCTGA 24040 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | ||| | ||| |||| ||| || || || |||| ||||| ||||| || ||| Sbjct 24041 GAGTGTGCGTCCATCCTCCAGTTGCTTTCCGGCGAAGATGAGTCTCTGTTGGTCGGGGGG 24100 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTG-CAACAGTGTCACCGGGCTCGG 18276 | ||||||||||| || | | |||| | | || | | |||||| | ||| Sbjct 24101 AATTCCTTCCTTATCTTGGATCT-TGGCTTTAACATTGTCGATAGTGTCTGAAGATTCGA 24159 Query 18277 TTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 ||| | |||||| | |||||||| | ||||| ||||| ||||||||| Sbjct 24160 CTTCCAAGGTGATTGTCTTGCCGGTGAGAGTTTTGACAAAGATTTGCATT 24209 >seq2313 Length=44285 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||| | || | ||| || | ||| ||||| || ||||| || |||||||||||| Sbjct 27644 TCCTCCTCTGAGACGAAGAACAAGGTGGAGTGTGGACTCTTTCTGTATGTTGTAGTCGCT 27585 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | ||| | | ||| |||| || || || || |||| ||||| ||||| || ||| Sbjct 27584 GAGGGTTCTTCCATCCTCCAGCTGCTTTCCAGCGAAGATGAGTCTCTGTTGGTCTGGGGG 27525 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | || |||||||| || | ||| || | | | ||||| | |||| Sbjct 27524 TATTCCCTCCTTATCTTGGATCTTGGCCTTTACATTGTCGATGGTGTCTGAGCTCTCGAC 27465 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328 ||| | |||||| | || ||||| || || ||||||||||| ||||| || Sbjct 27464 TTCCAAAGTGATGGTCTTTCCGGTTAAAGTCTTTACAAAAATCTGCATGTT 27414 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379332085871865