Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protostelium_20mycophagum_20[genbank_20GCA_5F002081555.1_202017-04- 06] 2,577 sequences; 39,717,957 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq1441 150 2e-31 seq1024 118 9e-22 seq2113 113 4e-20 seq1044 105 6e-18 seq593 105 6e-18 seq2313 102 7e-17 seq343 91.5 1e-13 seq717 82.4 7e-11 >seq1441 Length=33442 Score = 150 bits (166), Expect = 2e-31 Identities = 344/514 (67%), Gaps = 8/514 (2%) Strand=Plus/Minus Query 23371 CCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAA 23430 ||| || ||||| || || || || || | | ||| ||||| ||| |||||| | | Sbjct 2070 CCAGAGGGCGTAAAAGAGGTCACGTGCTCTCCTCTCTTCTTTTCCGTGATTCTTTCTGAG 2011 Query 23431 ATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGG 23490 ||||||||| || | ||| |||||||| ||||| || ||||||||||| || ||| Sbjct 2010 ATCCAAAAACTCGGTGATGTCGGCATGCCATGGCTCCAGATAAACGGCAAAGGCACCCTT 1951 Query 23491 TCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGG 23550 |||||| || || || ||||| ||||| || |||| ||| | ||||| ||||| || Sbjct 1950 CCTCTTACCACCTCCTTGGTCGACATAACGTGCAGTGTCATTGAAGACTCTAAGCATGGG 1891 Query 23551 CACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAAC---CTTTTGCTCGAAC 23607 ||||| || || || || || | || | | ||| || |||| | Sbjct 1890 GACGAGTCCATTAGAGGCACCATTTGTTCCTCTGA---TGTAACTGTCTGCAGCTCTGAT 1834 Query 23608 GTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAG 23667 ||||| | | ||| ||||||||| | ||||| || || | ||||| || || || Sbjct 1833 CTTGTGGGCAGACAGACCGATGCCTCCGGCAGATTTAGAGATGAGAGCGCACTGCTTTAG 1774 Query 23668 AGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACAT 23727 |||||||||||| |||||||| ||||| || | | | | ||| || |||||||| Sbjct 1773 AGTGTCGTAGATACCCTCGATAGAATCCTCCTTCATGTCCAAAAGGAAGCAGGAAGACAT 1714 Query 23728 TTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATT 23787 || | | | || || | | ||| ||||| || ||||||| || || | | Sbjct 1713 CTGAGGTCTTGGTGTGCCAGAGTTGAAAAGTGTGGGTGTGGCGTGTGTGAAAAACAGTTG 1654 Query 23788 CGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTC-CTCTCCGTGTATACCGATGG 23846 || | |||| || || |||||||| || | ||||| |||| ||| ||||||| | Sbjct 1653 GGATAACAGATGATATGTTTCGATGGCAGCTTTGATGTCTCTCT-TGTGAATACCGACAG 1595 Query 23847 CGACGCGCATCATCATGTATTGAGGTCTCTCGAC 23880 || | | | | || ||| ||||||||||| Sbjct 1594 ACACTCTGAGAAAGAGGTGTTGGGGTCTCTCGAC 1561 Score = 100 bits (110), Expect = 3e-16 Identities = 135/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 23006 ACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTG 23065 ||||||||| | |||||| || || |||||||| || || ||||| || | | ||| Sbjct 2482 ACAAACTTGGGCAGGGCGATGGATGCCAGATTGCACACCGCAACCTCATCCTGCGCAGTG 2423 Query 23066 TACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTG 23125 ||||| | ||| ||||| || | |||||| |||| || || || | || |||||| Sbjct 2422 TACTCCATAATCTCGGTGCACAAGTTGCTAGACTTGATGGTTCCGAGGTTCTGTTGGTTG 2363 Query 23126 CTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGAC 23185 || |||| ||| | |||||||||||||| || || || || ||||| | ||| || Sbjct 2362 CTCTTTCTGTTGGCGGCGTCCTTGTAGAGCATATAAGGTGTTCCGGTCTCAATCTGAGAG 2303 Query 23186 TCGATGAT 23193 || | ||| Sbjct 2302 TCCAAGAT 2295 >seq1024 Length=14032 Score = 118 bits (130), Expect = 9e-22 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 ||||||||||| ||||||||||| || ||||| || || || || | || || || | Sbjct 13778 AACATGCAAATCTTCGTAAAGACACTCACAGGAAAGACAATTACACTTGAGGTCGAGTCT 13837 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || || | |||| | |||||| | || ||||| || || | || |||||| Sbjct 13838 TCAGATACCATCGACAATGTCAAAGCCAAGATCCAAGACAAAGAGGGAATCCCACCCGAC 13897 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 || ||| | || || ||||| || || |||||||||||| | ||| ||||||| ||| Sbjct 13898 CAACAGAGACTCATCTTCGCCGGAAAGCAGTTGGAAGACGGCAGAACTTTGAGCGACTAT 13957 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTA 31402 ||||| || || ||||||||||| || ||||| Sbjct 13958 AACATCCAGAAGGAATCGACTCTCCACTTGGTA 13990 >seq2113 Length=21246 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| |||||| |||| || || || |||||| |||| || || | ||| Sbjct 20694 ATGCAAATTTTCGTGAAGACTTTGACCGGAAAGACCATCACCCTCGAGGTCGAGTCCTCC 20753 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | || || | || || ||||| || | || |||||||| Sbjct 20754 GACACCATCGACAATGTGAAGGCCAAGATTCAAGATAAGGAGGGAATCCCCCCCGACCAA 20813 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || ||||| || || ||| | || ||| || ||| | ||||| || || Sbjct 20814 CAGAGACTCATTTTCGCCGGAAAGCAGCTTGAGGACGGTAGAACTCTCAGCGACTACAAT 20873 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || || || || || |||||||| || |||||| | ||||| || || Sbjct 20874 ATCCAGAAGGAGTCCACTCTTCACCTTGTACTTCGTCTGAGAGGAGG 20920 >seq1044 Length=18651 Score = 105 bits (116), Expect = 6e-18 Identities = 166/235 (71%), Gaps = 6/235 (3%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 ||||||||||| ||||||||||| || || ||||| || ||||| | || || || Sbjct 18366 AACATGCAAATCTTCGTAAAGACACTCACCGGCAAGACAATCACATTGGAAGTCGAGAGT 18425 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || || | |||| | || ||| | ||| |||||||| || | || |||||| Sbjct 18426 TCAGATACCATCGATAATGTAAAAGCCAAGATACAAGACAAGGAGGGAATCCCACCCGAC 18485 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTA 31368 || ||| | || || |||||||| || || ||||||| | | | || |||| || || Sbjct 18486 CAACAGAGACTCATCTTCGCTGGAAAGCAACTGGAAGA-TGGACGCACACTGAGTGACTA 18544 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCT----GGTACTTAGACTGAGGGGCGG 31419 ||||| || ||||| || || ||||| | ||||||| |||||||||| || Sbjct 18545 CAACATACAGAAAGAGTCTACCCTTCACTTGGTAGGTACTTCGACTGAGGGGAGG 18599 >seq593 Length=28782 Score = 105 bits (116), Expect = 6e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 ||||||||||| ||||| ||||| || || || || || ||||| |||| || || Sbjct 16337 AACATGCAAATCTTCGTTAAGACACTAACTGGAAAGACAATCACACTCGAAGTGGAGAGT 16278 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || |||| |||| | || || | || ||||||||||| | || ||||| Sbjct 16277 TCAGACACAATCGATAATGTAAAGGCCAAGATCCAAGACAAGGAAGGAATCCCACCCGAT 16218 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 || ||| | || || ||||| || || |||||||||||| ||| |||||||||| Sbjct 16217 CAACAGAGACTCATCTTCGCCGGAAAGCAGTTGGAAGACGGCCGCACTTTGAGCGATTAC 16158 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTA 31402 ||||| || || || || ||||| ||| ||||| Sbjct 16157 AACATCCAGAAGGAGTCTACTCTCCATTTGGTA 16125 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/214 (70%), Gaps = 1/214 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| || ||||| || ||||| || || ||| | || || || | || Sbjct 16106 ATGCAAATTTTCGTCAAAACTCTCACTGGCAAGACAATTACCTTAGAAGTCGAGTCTTCA 16047 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | |||| | |||||| | || ||||| || || | || ||||| ||| Sbjct 16046 GATACCATCGACAATGTCAAAGCCAAGATCCAAGACAAAGAGGGAATCCCACCCGATCAG 15987 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || ||||| || || || || || ||| | ||| | ||||| || ||| Sbjct 15986 CAGAGACTCATTTTCGCCGGAAAGCAATTAGAGGACGGCAGAACTTTAAGCGACTACAAC 15927 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTA 31406 || || || ||||||||||| ||| | || |||| Sbjct 15926 ATCCAGAAGGAATCGACTCTCCATTTAGT-CTTA 15894 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| ||||| || || ||||| || ||||| || |||||| | || || ||| | || Sbjct 15650 ATGCAGATTTTTGTCAAAACTCTCACCGGCAAGACCATCACCTTAGAAGTAGAATCCTCA 15591 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | |||| | || || | || ||||||||||| | || |||||||| Sbjct 15590 GATACTATCGACAATGTTAAGGCCAAGATTCAAGACAAGGAAGGAATCCCTCCCGACCAA 15531 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || || || || || ||| | || ||| | ||| | || || ||| Sbjct 15530 CAGAGACTCATTTTTGCCGGAAAGCAGCTTGAGGACGGCAGAACTCTTTCTGACTACAAC 15471 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || |||||||| |||||||| || || || Sbjct 15470 ATCCAGAAAGAATCTACTCTTCACCTTGTCCT 15439 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| ||||| || || || || || ||||| |||| || || || Sbjct 28659 ATGCAAATCTTCGTCAAGACCCTCACTGGAAAGACAATCACACTCGAAGTAGAGAGCTCA 28600 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | |||| | || ||| | ||| ||||||||||| | || || || || Sbjct 28599 GATACCATCGACAATGTAAAAGCCAAGATACAAGACAAGGAAGGAATTCCCCCTGATCAA 28540 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACT--CTATGACTATGAGCGATTATA 31370 ||| | || || ||||| || || || || || ||| | | || | || | |||| Sbjct 28539 CAGAGACTCATCTTCGCCGGAAAGCAATTAGAGGACGGCCGAACCCTCTCAG--ACTATA 28482 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||||||| || || || |||||||||||||| ||| | || || || || Sbjct 28481 ACATTCAGAAGGAGTCTACTCTTCATCTGGTTCTTCGTCTCAGAGGAGG 28433 >seq2313 Length=44285 Score = 102 bits (112), Expect = 7e-17 Identities = 164/236 (69%), Gaps = 5/236 (2%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||||||||| || || || || || |||||| |||| |||||| | || Sbjct 27645 ATGCAGATCTTCGTAAAGACCCTCACTGGAAAGACAATCACCCTCGAAGTTGAATCTTCA 27704 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | || | ||||| | || |||||||||||| | || || ||||| Sbjct 27705 GATACAATAGACAACGTCAAGGCTAAGATCCAAGACAAGGAAGGCATTCCACCAGACCAA 27764 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || ||||| || || ||| | || ||| | || | ||||| || ||| Sbjct 27765 CAGAGACTCATCTTCGCCGGAAAGCAGCTAGAGGACGGAAGAACCCTCAGCGACTACAAC 27824 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT-----GAGGGGCGGTAGA 31423 |||||||| || || || || || || || ||| | || ||||||||| ||| Sbjct 27825 ATTCAAAAGGAGTCCACGCTCCACCTTGTTCTTCGTCTCAGAGGAGGGGCGGAAGA 27880 >seq343 Length=26413 Score = 91.5 bits (100), Expect = 1e-13 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| |||||| |||| || || || |||||| |||| || || || Sbjct 76 ATGCAGATTTTCGTCAAGACTTTGACTGGAAAGACAATCACCCTCGAAGTAGAGAGTTCA 135 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||| | || ||| | ||| ||||| |||||| | || ||||| || Sbjct 136 GACACTATCGACAACGTAAAAGCCAAGATACAAGACAAAGAAGGCATCCCACCCGATCAA 195 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA---CTCTATGACTATGAGCGATTAT 31369 ||| | || || || || || || ||| | || || | || || | || | ||| Sbjct 196 CAGAGACTCATTTTTGCCGGAAAGCAGCTCGAGGATGGCCGTACC-CTCTCAG--ACTAT 252 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 |||||||| || || || ||||||||||| || ||| | |||| || || Sbjct 253 AACATTCAGAAGGAGTCTACTCTTCATCTCGTTCTTCGCTTGAGAGGAGG 302 >seq717 Length=13837 Score = 82.4 bits (90), Expect = 7e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 |||||||| |||||||||||||| || ||||| || || || || | || || || | Sbjct 393 AACATGCAGATTTTCGTAAAGACCCTCACAGGAAAGACTATTACTTTGGAAGTAGAGTCC 334 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 ||||||| |||| | ||||| | || ||||||||||| | || ||||| Sbjct 333 TCCGACACCATCGATAACGTCAAGGCCAAGATTCAAGACAAGGAAGGAATCCCTCCCGAT 274 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 || ||| | | || ||||| || || ||||| || || || | ||| || Sbjct 273 CAACAGAGATTGATCTTCGCCGGAAAGCAGTTAGAGGATGGGCGCACCCTCTCCGACTAC 214 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||||| |||||||| || || || || || || ||| | || || || || Sbjct 213 AACATCCAAAAAGAGTCCACCCTCCACCTTGTTCTTCGTCTCAGAGGAGG 164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445752040749840