Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protostelium_20mycophagum_20[genbank_20GCA_5F002081555.1_202017-04- 06] 2,577 sequences; 39,717,957 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq2030 98.7 2e-15 seq637 98.7 2e-15 seq1441 95.1 2e-14 >seq2030 Length=13636 Score = 98.7 bits (108), Expect = 2e-15 Identities = 242/366 (66%), Gaps = 52/366 (14%) Strand=Plus/Plus Query 35394 AGGGAGATTTGGGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGCTGAATATGAT- 35452 |||| ||| | ||||| || ||||||| |||||| | |||| ||| || |||||| Sbjct 12195 AGGGTGATCTAGGACCAGTGTACGGATGGCAATGGAGACATTATGGCGCCAAATATGTCG 12254 Query 35453 ACCTGTTCTTCCGATTATACTGGAAAGGGTATTGATCAATTGGCCAATATACTAAAGACC 35512 || ||| | ||||||||||||| | ||| |||||||| | |||| || | |||| Sbjct 12255 ACATGTACA-CCGATTATACTGGTCAAGGTTTTGATCAACT--CCAAAATGTGATAGACA 12311 Query 35513 C---TGAGAGAAAATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTA-TGG- 35567 | | ||| | || ||| |||||||||| || || | || || ||||| ||| ||| Sbjct 12312 CAATTAAGA-ATAACCCAAATGATAGAAGAATAATCTTAACCGCTTGGAACCCTTCTGGT 12370 Query 35568 -------------------------------ATCTTC-ACCTT------ATGGCTCTTCC 35589 ||||| |||| ||||| ||||| Sbjct 12371 AAGTTGTCCTAAAATTACCATCTCTGATCGTATCTTAGACCTCGGTTTGATGGCCCTTCC 12430 Query 35590 TCCATGCCACATGACTGCTCAATTTTATGTGGCTAATGGAGAATTGTCGTGCCAGTTGTA 35649 ||| || |||||| | ||||||||||||||| ||||| || || || |||||| |||| Sbjct 12431 TCCTTGTCACATGTTTTGTCAATTTTATGTGGCCAATGGCGAGTTATCTTGCCAGATGTA 12490 Query 35650 TCAGCGA--AGCGGAGATGTCGGGTTGGGCGTGCCCTTCAATATTGCATCATACTCTCTT 35707 ||| || ||| || ||| || || || || |||||||| ||||| || ||| | ||| Sbjct 12491 CCAGAGATCAGCCGACATG--GGATTAGGTGTTCCCTTCAACATTGCCTCTTACGCCCTT 12548 Query 35708 CTGACT 35713 | ||| Sbjct 12549 TTAACT 12554 >seq637 Length=38019 Score = 98.7 bits (108), Expect = 2e-15 Identities = 242/366 (66%), Gaps = 52/366 (14%) Strand=Plus/Plus Query 35394 AGGGAGATTTGGGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGCTGAATATGAT- 35452 |||| ||| | ||||| || ||||||| |||||| | |||| ||| || |||||| Sbjct 11084 AGGGTGATCTAGGACCAGTGTACGGATGGCAATGGAGACATTATGGCGCCAAATATGTCG 11143 Query 35453 ACCTGTTCTTCCGATTATACTGGAAAGGGTATTGATCAATTGGCCAATATACTAAAGACC 35512 || ||| | ||||||||||||| | ||| |||||||| | |||| || | |||| Sbjct 11144 ACATGTACA-CCGATTATACTGGTCAAGGTTTTGATCAACT--CCAAAATGTGATAGACA 11200 Query 35513 C---TGAGAGAAAATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTA-TGG- 35567 | | ||| | || ||| |||||||||| || || | || || ||||| ||| ||| Sbjct 11201 CAATTAAGA-ATAACCCAAATGATAGAAGAATAATCTTAACCGCTTGGAACCCTTCTGGT 11259 Query 35568 -------------------------------ATCTTC-ACCTT------ATGGCTCTTCC 35589 ||||| |||| ||||| ||||| Sbjct 11260 AAGTTGTCCTAAAATTACCATCTCTGATCGTATCTTAGACCTCGGTTTGATGGCCCTTCC 11319 Query 35590 TCCATGCCACATGACTGCTCAATTTTATGTGGCTAATGGAGAATTGTCGTGCCAGTTGTA 35649 ||| || |||||| | ||||||||||||||| ||||| || || || |||||| |||| Sbjct 11320 TCCTTGTCACATGTTTTGTCAATTTTATGTGGCCAATGGCGAGTTATCTTGCCAGATGTA 11379 Query 35650 TCAGCGA--AGCGGAGATGTCGGGTTGGGCGTGCCCTTCAATATTGCATCATACTCTCTT 35707 ||| || ||| || ||| || || || || |||||||| ||||| || ||| | ||| Sbjct 11380 CCAGAGATCAGCCGACATG--GGATTAGGTGTTCCCTTCAACATTGCCTCTTACGCCCTT 11437 Query 35708 CTGACT 35713 | ||| Sbjct 11438 TTAACT 11443 >seq1441 Length=33442 Score = 95.1 bits (104), Expect = 2e-14 Identities = 127/177 (72%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 94164 CTTCACAAACTTGTTGACTGCGATAGAAGCCAAATTGCACACTGCAGTTTCCTCCGAATC 94223 ||| ||||||||| | ||||| || |||| ||||||||| ||| || ||| | Sbjct 2486 CTTGACAAACTTGGGCAGGGCGATGGATGCCAGATTGCACACCGCAACCTCATCCTGCGC 2427 Query 94224 ACTGTACTGGACAATTTCAGTGCACAAATTTGAAGACTTGATGATGCCGACATTTTCTTG 94283 | |||||| | ||| || |||||||| || |||||||||| | |||| || | ||| Sbjct 2426 AGTGTACTCCATAATCTCGGTGCACAAGTTGCTAGACTTGATGGTTCCGAGGTTCTGTTG 2367 Query 94284 GTTAGACTTTCTATTGATGGTATCCTTAAAGCACACATAAGGTGTTCCAGTTTCGAT 94340 ||| |||||| ||| || ||||| || || |||||||||||| || || || Sbjct 2366 GTTGCTCTTTCTGTTGGCGGCGTCCTTGTAGAGCATATAAGGTGTTCCGGTCTCAAT 2310 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989551326101035