Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protostelium_20mycophagum_20[genbank_20GCA_5F002081555.1_202017-04- 06] 2,577 sequences; 39,717,957 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq1881 136 5e-27 seq455 122 1e-22 seq1441 91.5 2e-13 >seq1881 Length=25171 Score = 136 bits (150), Expect = 5e-27 Identities = 248/362 (69%), Gaps = 6/362 (2%) Strand=Plus/Minus Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 || ||||| ||||| || || || || ||||| || ||||| || || || Sbjct 18044 CAAGCGAAGTCGCAATGTAGCCCTTCATCTCTTGATATGAATTCATTTGATTTTCCAAGA 17985 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 || ||| || || | ||| || |||||||| ||||| ||| || || ||||||||| Sbjct 17984 CCCTCCATGAGTCCCCTCTTCTTCAGCCAAAAGATGGAGCAGAAGGAACCAGAAAAGAAG 17925 Query 33702 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTATC 33761 || || || || ||||||||||||| |||||||||||| || | | || | ||| Sbjct 17924 ATACCCTCCACAGCAGCAAAGGCAACGAGTCTCTCTCCAAAAGAGTCCGAATCGTTGATC 17865 Query 33762 CA---CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 33818 || | || ||||| || |||||||||| || ||||| || || || || | Sbjct 17864 CAGCGCATT---GCCCACTCTGCCTTCTTTTGTATGCAAGGAATGTGATCGATAGCGTGG 17808 Query 33819 AAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATT 33878 || | || || || || |||| | ||| || ||||||| |||| || || Sbjct 17807 AATAAGAGGTGCTTCTCTTTCTCATCTCGGATATACGTGTCGATCAGAAGAGAGTATGTT 17748 Query 33879 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 33938 || | ||| ||||| || ||||| |||||||| || || || ||||| ||||| | |||| Sbjct 17747 TCGGCATGTATGTTCTCTATGGCAATCTGAAAGCCATAAAAGCATCTGGCCTCTGGAATC 17688 Query 33939 TG 33940 || Sbjct 17687 TG 17686 >seq455 Length=31299 Score = 122 bits (134), Expect = 1e-22 Identities = 239/351 (68%), Gaps = 2/351 (1%) Strand=Plus/Plus Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 || || || |||||||| || || ||||| | | ||| |||||||| || | || Sbjct 8568 CAGGCAAAGTCGCAGTGGAGTCCTTCGTCGCGAGAAATAAATTCGTTTGATGTGGAAAGA 8627 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 || ||||| || || | ||| || | |||||| |||||| ||| || || || |||||| Sbjct 8628 CCTGGCATGAGACCTCTCTTCTTCAACCAAAAGATGGAACAGAAGGAACCAGAGAAGAAG 8687 Query 33702 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTATC 33761 || || ||||| ||||| || || | || | ||||| || | || |||| ||| Sbjct 8688 ATGCCCTCTACGGCAGCGAAAGCGACGAGGCGTTCTCCGAAAGAGTCGGAATCATTGATC 8747 Query 33762 CACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAG 33821 || ||||||| || ||||||||||| | || || || || ||||||| ||| Sbjct 8748 CAGCGAAGAGCCCAGTCCGCCTTCTTTTTGATGCAGGGGATGTGGTCGATGGCATGGAAG 8807 Query 33822 AG-ATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTC 33880 || || | || || | || || | || || || ||||| ||| ||| | || Sbjct 8808 AGCATTG-CCTTCTCGGTGGGGTCCTTGATGTACGTGTCTATCAAGAGAGAATAAGTCTC 8866 Query 33881 CGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTC 33931 | || ||||| |||||||| || ||||| || || || |||| ||||| Sbjct 8867 AGCGTGTATGTTCTCAATGGCAATTTGAAACCCATAAAAGCATCGCGCCTC 8917 >seq1441 Length=33442 Score = 91.5 bits (100), Expect = 2e-13 Identities = 132/185 (71%), Gaps = 6/185 (3%) Strand=Plus/Minus Query 62928 ACAAACATGTTCAATGCAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCA 62987 |||||| || || || | ||||||||||| ||||| || ||||||| | | |||| Sbjct 2482 ACAAACTTGGGCAGGGCGATGGATGCCAGATTGCACACCGCAACCTCAT---CCTGCGCA 2426 Query 62988 ---TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGA 63044 || | || ||||| ||||| | || ||| ||||||| ||||| | || ||||| Sbjct 2425 GTGTACTCCATAATCTCGGTGCACAAGTTGCTAGACTTGATGGTTCCGAGGTTCTGTTGG 2366 Query 63045 TTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGA 63104 || |||||| |||| || ||||| || || || | || || || || ||||||||| Sbjct 2365 TTGCTCTTTCTGTTGGCGGCGTCCTTGTAGAGCATATAAGGTGTTCCGGTCTCAATCTGA 2306 Query 63105 GATTC 63109 || || Sbjct 2305 GAGTC 2301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629797312000560