Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protostelium_20mycophagum_20[genbank_20GCA_5F002081555.1_202017-04- 06] 2,577 sequences; 39,717,957 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq1881 132 6e-26 seq455 104 3e-17 seq1441 98.7 1e-15 >seq1881 Length=25171 Score = 132 bits (146), Expect = 6e-26 Identities = 250/364 (69%), Gaps = 8/364 (2%) Strand=Plus/Minus Query 36158 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 36217 || ||||| ||||| ||||| || || ||||| || ||||| || || || Sbjct 18044 CAAGCGAAGTCGCAATGTAGCCCTTCATCTCTTGATATGAATTCATTTGATTTTCCAAGA 17985 Query 36218 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGAA 36276 || ||| || || | ||| || |||||||| ||||| ||| || || ||||||||||| Sbjct 17984 CCCTCCATGAGTCCCCTCTTCTTCAGCCAAAAGATGGA-GCAGAAGGAACCAGAAAAGAA 17926 Query 36277 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTAT 36336 || || || || || |||||||||| |||||||||||| || | | || | || Sbjct 17925 GATACCCTCCACAGCAGCAAAGGCAACGAGTCTCTCTCCAAAAGAGTCCGAATCGTTGAT 17866 Query 36337 CCA---CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATT 36393 ||| | || ||||| || |||||||||| || ||||| || || ||||| | Sbjct 17865 CCAGCGCATT---GCCCACTCTGCCTTCTTTTGTATGCAAGGAATGTGATCGATAGCGTG 17809 Query 36394 AAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACAT 36453 || | || || || || |||| | ||| || || |||| |||| || | Sbjct 17808 GAATAAGAGGTGCTTCTCTTTCTCATCTCGGATATACGTGTCGATCAGAAGAGAGTATGT 17749 Query 36454 TTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 36513 ||| | ||| ||||| || ||||| || ||||| || || || ||||| ||||| | ||| Sbjct 17748 TTCGGCATGTATGTTCTCTATGGCAATCTGAAAGCCATAAAAGCATCTGGCCTCTGGAAT 17689 Query 36514 CTGT 36517 |||| Sbjct 17688 CTGT 17685 >seq455 Length=31299 Score = 104 bits (114), Expect = 3e-17 Identities = 235/351 (67%), Gaps = 2/351 (1%) Strand=Plus/Plus Query 36158 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 36217 || || || |||||||| || || ||||| | | ||| |||||||| || | || Sbjct 8568 CAGGCAAAGTCGCAGTGGAGTCCTTCGTCGCGAGAAATAAATTCGTTTGATGTGGAAAGA 8627 Query 36218 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 36277 || ||||| || || | ||| || | |||||| ||||| || || ||||| ||||| Sbjct 8628 CCTGGCATGAGACCTCTCTTCTTCAACCAAAAGATGGAACAGAAGGAACCAGAGAAGAAG 8687 Query 36278 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTATC 36337 || || ||||| || || || || | || | ||||| || | | |||| ||| Sbjct 8688 ATGCCCTCTACGGCAGCGAAAGCGACGAGGCGTTCTCCGAAAGAGTCGGAATCATTGATC 8747 Query 36338 CACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAG 36397 || ||||||| || ||||||||||| | || || || || || |||| ||| Sbjct 8748 CAGCGAAGAGCCCAGTCCGCCTTCTTTTTGATGCAGGGGATGTGGTCGATGGCATGGAAG 8807 Query 36398 AG-ATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTC 36456 || || | || || | || || | || || || ||||| ||| ||| | || Sbjct 8808 AGCATTG-CCTTCTCGGTGGGGTCCTTGATGTACGTGTCTATCAAGAGAGAATAAGTCTC 8866 Query 36457 CGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTC 36507 | || ||||| |||||||| |||||||| || || || |||| ||||| Sbjct 8867 AGCGTGTATGTTCTCAATGGCAATTTGAAACCCATAAAAGCATCGCGCCTC 8917 >seq1441 Length=33442 Score = 98.7 bits (108), Expect = 1e-15 Identities = 251/375 (67%), Gaps = 13/375 (3%) Strand=Plus/Minus Query 65721 ACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA 65780 |||||| || || || | ||||||||||| || || || ||||||| | | |||| Sbjct 2482 ACAAACTTGGGCAGGGCGATGGATGCCAGATTGCACACCGCAACCTCAT---CCTGCGCA 2426 Query 65781 ---TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGA 65837 || | || ||||| ||||| | || ||| ||||||||||||| | || ||||| Sbjct 2425 GTGTACTCCATAATCTCGGTGCACAAGTTGCTAGACTTGATGGTTCCGAGGTTCTGTTGG 2366 Query 65838 TTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGA 65897 || |||||| |||| || ||||| || || || | || || || || ||||||||| Sbjct 2365 TTGCTCTTTCTGTTGGCGGCGTCCTTGTAGAGCATATAAGGTGTTCCGGTCTCAATCTGA 2306 Query 65898 GATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTT---GTATCTCTTT 65954 || || | || | ||| | | | ||||| || | | | | || | | Sbjct 2305 GAGTCCAAGATGGAGAACCACAGATCCTGGGCCTTGATCGTCTTTCTGGCGAGTCCCGGT 2246 Query 65955 TCTCTTTCGTA-TAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCA-ATC 66012 |||||| | || | ||||| | || ||||| |||||||| || | || | | | Sbjct 2245 GTGGCTTCGTACTTGT-TGTACAACTGCTCAAACTCCTCTCCCCAGACCTCGTGGAGACC 2187 Query 66013 CAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAA 66072 | | | ||| | ||||| | || ||||| ||||| || |||| ||||| ||||||| Sbjct 2186 CTTGGC-TTCGTTGGGACAGAATAAGGACCAGTCTCCATCTTCCTCCACTCTCTTCATAA 2128 Query 66073 AGAGATCAGGAATCC 66087 | ||||| || |||| Sbjct 2127 ACAGATCGGGGATCC 2113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658151598608680