Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protostelium_20mycophagum_20[genbank_20GCA_5F002081555.1_202017-04- 06] 2,577 sequences; 39,717,957 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq1766 93.3 4e-14 seq1044 87.8 2e-12 seq343 82.4 8e-11 >seq1766 Length=5059 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| | ||| ||||||||||| | |||||||| |||||||| || || ||||| Sbjct 4710 CCTCCTCTGAGACGTAAAACTAAGTGGAGAGTAGACTCCTTTTGAATATTGTAGTCGCTA 4769 Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | ||||| || | || || | || || || || | || || | || |||||||| || Sbjct 4770 AGTGTGCGTCCA-TCCTCTAATTGCTTTCCGGCGAAAATGAGTCTCTGTTGATCGGGTGG 4828 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || || || ||||| || || ||||| | || | ||||| | | |||||| Sbjct 4829 GATTCCCTCCTTGTCTTGTATCTTGGCTTTTACATTGTCGATGGTGTCTGAGCTCTCCAC 4888 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | ||| | ||||| || ||||| || || ||||| || ||||| Sbjct 4889 TTCGAGGGTGATTGTCTTTCCAGTCAAAGTCTTAACGAAAATCTGCAT 4936 >seq1044 Length=18651 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTC 139614 || ||||||| ||||||||||| || ||||| || || |||| ||||| || | ||||| Sbjct 18577 ACCAAGTGAAGGGTAGACTCTTTCTGTATGTTGTAGTCACTCAGTGTGCGTCCA-TCTTC 18519 Query 139615 GAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 139674 || || || ||||| |||| || | || || ||||| || || || || ||||| Sbjct 18518 CAGTTGCTTTCCAGCGAAGATGAGTCTCTGTTGGTCGGGTGGGATTCCCTCCTTGTCTTG 18459 Query 139675 GATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTT 139734 || || ||||| | || | || || | ||| || || | || | ||||| Sbjct 18458 TATCTTGGCTTTTACATTATCGATGGTATCTGAACTCTCGACTTCCAATGTGATTGTCTT 18399 Query 139735 GCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||| | || |||||||| |||||||| Sbjct 18398 GCCGGTGAGTGTCTTTACGAAGATTTGCAT 18369 >seq343 Length=26413 Score = 82.4 bits (90), Expect = 8e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 139535 TGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCG 139594 || || |||| || || | ||| | |||| |||||||| || ||||||||||| || Sbjct 305 TGTCCTCCTCTCAAGCGAAGAACGAGATGAAGAGTAGACTCCTTCTGAATGTTATAGTCT 246 Query 139595 CTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 139654 | || | || |||||||| || || ||| | || || | || |||||||| Sbjct 245 GAGAGGGTACGGCCATCCTCGAGCTGCTTTCCGGCAAAAATGAGTCTCTGTTGATCGGGT 186 Query 139655 GGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCC 139714 || |||||||||||||| || || ||||| | || | ||||| | ||| Sbjct 185 GGGATGCCTTCTTTGTCTTGTATCTTGGCTTTTACGTTGTCGATAGTGTCTGAACTCTCT 126 Query 139715 ACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || || | ||| | ||||| || ||||| || || ||||| || ||||| Sbjct 125 ACTTCGAGGGTGATTGTCTTTCCAGTCAAAGTCTTGACGAAAATCTGCAT 76 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496048020538400