Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protostelium_20mycophagum_20[genbank_20GCA_5F002081555.1_202017-04- 06] 2,577 sequences; 39,717,957 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq1881 134 2e-26 seq455 113 6e-20 seq1441 104 3e-17 >seq1881 Length=25171 Score = 134 bits (148), Expect = 2e-26 Identities = 211/298 (71%), Gaps = 8/298 (3%) Strand=Plus/Minus Query 50025 CATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGAAAAGAAGATTC 50083 ||| || || | ||| || |||||||| ||||| ||| || || |||||||||||||| | Sbjct 17979 CATGAGTCCCCTCTTCTTCAGCCAAAAGATGGA-GCAGAAGGAACCAGAAAAGAAGATAC 17921 Query 50084 CTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTCATGTATCCA-- 50141 | || || || ||||||||||| |||||||||||| || | | || | ||||| Sbjct 17920 CCTCCACAGCAGCAAAGGCAACGAGTCTCTCTCCAAAAGAGTCCGAATCGTTGATCCAGC 17861 Query 50142 -CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGA 50200 | || ||||| || |||||||||| || ||||| || || || || | || | Sbjct 17860 GCATT---GCCCACTCTGCCTTCTTTTGTATGCAAGGAATGTGATCGATAGCGTGGAATA 17804 Query 50201 GATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCG 50260 || || || || |||| | ||| || ||||||| |||| || |||| | Sbjct 17803 AGAGGTGCTTCTCTTTCTCATCTCGGATATACGTGTCGATCAGAAGAGAGTATGTTTCGG 17744 Query 50261 AATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTG 50318 ||| ||||| || ||||| |||||||| || || || ||||| ||||| | |||||| Sbjct 17743 CATGTATGTTCTCTATGGCAATCTGAAAGCCATAAAAGCATCTGGCCTCTGGAATCTG 17686 >seq455 Length=31299 Score = 113 bits (124), Expect = 6e-20 Identities = 237/351 (68%), Gaps = 2/351 (1%) Strand=Plus/Plus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || || || |||||||| || || ||||| | | ||| | |||||| || | || Sbjct 8568 CAGGCAAAGTCGCAGTGGAGTCCTTCGTCGCGAGAAATAAATTCGTTTGATGTGGAAAGA 8627 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAG 50079 || ||||| || || | ||| || | |||||| ||||| || || ||||| |||||| Sbjct 8628 CCTGGCATGAGACCTCTCTTCTTCAACCAAAAGATGGAACAGAAGGAACCAGAGAAGAAG 8687 Query 50080 ATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTCATGTATC 50139 || || ||||| || || || || || || | ||||| || | || |||| ||| Sbjct 8688 ATGCCCTCTACGGCAGCGAAAGCGACGAGGCGTTCTCCGAAAGAGTCGGAATCATTGATC 8747 Query 50140 CACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAG 50199 || ||||||| || ||||||||||| | || || || || ||||||| ||| Sbjct 8748 CAGCGAAGAGCCCAGTCCGCCTTCTTTTTGATGCAGGGGATGTGGTCGATGGCATGGAAG 8807 Query 50200 AG-ATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTC 50258 || || | || || | || || | || || || ||||| ||| ||| | || Sbjct 8808 AGCATTG-CCTTCTCGGTGGGGTCCTTGATGTACGTGTCTATCAAGAGAGAATAAGTCTC 8866 Query 50259 CGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTC 50309 | || ||||| |||||||| || ||||| || || || |||| ||||| Sbjct 8867 AGCGTGTATGTTCTCAATGGCAATTTGAAACCCATAAAAGCATCGCGCCTC 8917 >seq1441 Length=33442 Score = 104 bits (114), Expect = 3e-17 Identities = 254/378 (67%), Gaps = 19/378 (5%) Strand=Plus/Minus Query 79600 ACAAACATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA 79659 |||||| || || |||| ||||||||||| || || || ||||||| | | |||| Sbjct 2482 ACAAACTTGGGCAGGGCGATGGATGCCAGATTGCACACCGCAACCTCAT---CCTGCGCA 2426 Query 79660 ---TATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGA 79716 || | || || || ||||| | ||| ||| |||| |||||||| | || ||||| Sbjct 2425 GTGTACTCCATAATCTCGGTGCACAAGTTGCTAGACTTGATGGTTCCGAGGTTCTGTTGG 2366 Query 79717 TTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGA 79776 || |||||| |||| || ||||| || || || | || || || || ||||||||| Sbjct 2365 TTGCTCTTTCTGTTGGCGGCGTCCTTGTAGAGCATATAAGGTGTTCCGGTCTCAATCTGA 2306 Query 79777 GATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGACTT------GTATCTC 79830 || || | || | ||| | | | |||| | || | ||| | || | Sbjct 2305 GAGTCCAAGATGGAGAACCACAGATCCTGGGCCT---TGATCGTCTTTCTGGCGAGTCCC 2249 Query 79831 TTTTCTCTTTCGTA-TTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTA- 79888 | |||||| |||| | || || | || ||||| |||||||| || |||| | Sbjct 2248 GGTGTGGCTTCGTACTTGT-TGTACAACTGCTCAAACTCCTCTCCCCAGACCTCGTGGAG 2190 Query 79889 ATCCAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCA 79948 | || | | ||||| ||||| | || ||||| |||||||| |||| |||| |||| Sbjct 2189 ACCCTTGGC-TTCGTTGGGACAGAATAAGGACCAGTCTCCATCTTCCTCCACTCTCTTCA 2131 Query 79949 TAAAGAGATCAGGAATCC 79966 |||| ||||| || |||| Sbjct 2130 TAAACAGATCGGGGATCC 2113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718245662766280