Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protostelium_20mycophagum_20[genbank_20GCA_5F002081555.1_202017-04- 06] 2,577 sequences; 39,717,957 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq593 96.9 3e-15 seq1766 82.4 6e-11 >seq593 Length=28782 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| | || | ||| || ||||||| ||| ||||| || | ||||| ||| Sbjct 15880 CCTCCTCTGAGACGTAAGACTAAATGGAGAGTCGATTCCTTCTGGATGTTGTAGTCGCTT 15939 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || || | |||| || ||||| || ||||| ||||| | || ||| ||||||| || Sbjct 15940 AAAGTTCTGCCGTCCTCTAATTGCTTTCCGGCGAAAATGAGTCTCTGCTGATCGGGTGGG 15999 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | || ||||| || |||| ||||||| || | | || || || |||||| Sbjct 16000 ATTCCCTCTTTGTCTTGGATCTTGGCTTTGACATTGTCGATGGTATCTGAAGACTCGACT 16059 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 |||| || || || || || || |||||||| || |||||||||||| Sbjct 16060 TCTAAGGTAATTGTCTTGCCAGTGAGAGTTTTGACGAAAATTTGCATT 16107 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 42897 TAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTC 42956 ||| |||||||||| ||| |||||| || | ||||||||| ||| || || |||| Sbjct 16122 TAATACCAAATGGAGAGTAGACTCCTTCTGGATGTTGTAATCGCTCAAAGTGCGGCCGTC 16181 Query 42957 GTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTC 43016 ||||| || || ||||| || || | || ||||||||||| || | ||||| || || Sbjct 16182 TTCCAACTGCTTTCCGGCGAAGATGAGTCTCTGTTGATCGGGTGGGATTCCTTCCTTGTC 16241 Query 43017 GCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGT 43076 |||| | || || | | | |||||| | ||| || || | || || || Sbjct 16242 TTGGATCTTGGCCTTTACATTATCGATTGTGTCTGAACTCTCCACTTCGAGTGTGATTGT 16301 Query 43077 TTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112 ||||| ||||| || || || || |||||||| || Sbjct 16302 CTTTCCAGTTAGTGTCTTAACGAAGATTTGCATGTT 16337 >seq1766 Length=5059 Score = 82.4 bits (90), Expect = 6e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| | || | ||| || || |||| ||| ||||||||| | |||||| ||| Sbjct 4710 CCTCCTCTGAGACGTAAAACTAAGTGGAGAGTAGACTCCTTTTGAATATTGTAGTCGCTA 4769 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||| ||| | || || ||||| || ||||| ||||| | || ||||||||||| || Sbjct 4770 AGTGTGCGTCCATCCTCTAATTGCTTTCCGGCGAAAATGAGTCTCTGTTGATCGGGTGGG 4829 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGAC 43061 | || || || || ||| |||| || || | | ||||| ||| ||| || Sbjct 4830 ATTCCCTCCTTGTCTTGTATCTTGGCTTTTACATTGTCGATGGTGTC-TGAGCTCTCCAC 4888 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || | || || || ||||| || | ||| || || ||||| |||||| Sbjct 4889 TTCGAGGGTGATTGTCTTTCCAGTCAAAGTCTTAACGAAAATCTGCATT 4937 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381357622253466