Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protostelium_20mycophagum_20[genbank_20GCA_5F002081555.1_202017-04- 06] 2,577 sequences; 39,717,957 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq1881 136 5e-27 seq455 100 4e-16 seq1441 98.7 1e-15 >seq1881 Length=25171 Score = 136 bits (150), Expect = 5e-27 Identities = 251/364 (69%), Gaps = 8/364 (2%) Strand=Plus/Minus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 || ||||| ||||| || || || |||||||| || ||||| || || || Sbjct 18044 CAAGCGAAGTCGCAATGTAGCCCTTCATCTCTTGATATGAATTCATTTGATTTTCCAAGA 17985 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA-AATGATCCAGAAAAGAA 42183 || ||| || || | ||| || |||||||| || || ||| || || ||||||||||| Sbjct 17984 CCCTCCATGAGTCCCCTCTTCTTCAGCCAAAAGATGGA-GCAGAAGGAACCAGAAAAGAA 17926 Query 42184 GATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTAT 42243 ||| || || || || |||||||||| |||||||||||| || | | || | || Sbjct 17925 GATACCCTCCACAGCAGCAAAGGCAACGAGTCTCTCTCCAAAAGAGTCCGAATCGTTGAT 17866 Query 42244 CCA---CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 42300 ||| | || ||||| || |||||||||| || ||||| || || || || | Sbjct 17865 CCAGCGCATT---GCCCACTCTGCCTTCTTTTGTATGCAAGGAATGTGATCGATAGCGTG 17809 Query 42301 AAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACAT 42360 || | || || || || |||| | ||| || ||||||| |||| || | Sbjct 17808 GAATAAGAGGTGCTTCTCTTTCTCATCTCGGATATACGTGTCGATCAGAAGAGAGTATGT 17749 Query 42361 TTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAAC 42420 ||| | ||| ||||| || ||||| |||||||| || || || ||||||||||| | || Sbjct 17748 TTCGGCATGTATGTTCTCTATGGCAATCTGAAAGCCATAAAAGCATCTGGCCTCTGGAAT 17689 Query 42421 CTGT 42424 |||| Sbjct 17688 CTGT 17685 >seq455 Length=31299 Score = 100 bits (110), Expect = 4e-16 Identities = 239/359 (67%), Gaps = 2/359 (1%) Strand=Plus/Plus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 || || || |||||||| || || || || | | ||| |||||||| || | || Sbjct 8568 CAGGCAAAGTCGCAGTGGAGTCCTTCGTCGCGAGAAATAAATTCGTTTGATGTGGAAAGA 8627 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAG 42184 || ||||| || || | ||| || | |||||| || || || || ||||| |||||| Sbjct 8628 CCTGGCATGAGACCTCTCTTCTTCAACCAAAAGATGGAACAGAAGGAACCAGAGAAGAAG 8687 Query 42185 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTATC 42244 || || ||||| || || || || | || | ||||| || | | |||| ||| Sbjct 8688 ATGCCCTCTACGGCAGCGAAAGCGACGAGGCGTTCTCCGAAAGAGTCGGAATCATTGATC 8747 Query 42245 CACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAG 42304 || ||||||| || ||||||||||| | || || || || ||||||| ||| Sbjct 8748 CAGCGAAGAGCCCAGTCCGCCTTCTTTTTGATGCAGGGGATGTGGTCGATGGCATGGAAG 8807 Query 42305 AG-ATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTC 42363 || || | || || | || || | || || || ||||| ||| ||| | || Sbjct 8808 AGCATTG-CCTTCTCGGTGGGGTCCTTGATGTACGTGTCTATCAAGAGAGAATAAGTCTC 8866 Query 42364 TGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCT 42422 | || ||||| |||||||| || ||||| || || || |||| ||||| | |||| Sbjct 8867 AGCGTGTATGTTCTCAATGGCAATTTGAAACCCATAAAAGCATCGCGCCTCAGGGACCT 8925 >seq1441 Length=33442 Score = 98.7 bits (108), Expect = 1e-15 Identities = 252/375 (67%), Gaps = 13/375 (3%) Strand=Plus/Minus Query 71683 ACAAACACGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCA 71742 |||||| | || ||| | ||||||||||| || || || ||||||| | | ||| Sbjct 2482 ACAAACTTGGGCAGGGCGATGGATGCCAGATTGCACACCGCAACCTCAT---CCTGCGCA 2426 Query 71743 ---TATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGA 71799 || | ||||| || ||||| | || ||| ||||||||||||| | || ||||| Sbjct 2425 GTGTACTCCATAATCTCGGTGCACAAGTTGCTAGACTTGATGGTTCCGAGGTTCTGTTGG 2366 Query 71800 TTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGA 71859 || |||||| |||| || ||||| || || ||| | || || || || ||||||||| Sbjct 2365 TTGCTCTTTCTGTTGGCGGCGTCCTTGTAGAGCATATAAGGTGTTCCGGTCTCAATCTGA 2306 Query 71860 GATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTAT-ATTCT--TGTATCTCTTT 71916 || || | || | ||| | | | ||||| || | |||| | || | | Sbjct 2305 GAGTCCAAGATGGAGAACCACAGATCCTGGGCCTTGATCGTCTTTCTGGCGAGTCCCGGT 2246 Query 71917 TCTCTTTCGTA-TTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTA-ATC 71974 |||||| |||| | || || | || ||||| |||||||| | | || | | | Sbjct 2245 GTGGCTTCGTACTTGT-TGTACAACTGCTCAAACTCCTCTCCCCAGACCTCGTGGAGACC 2187 Query 71975 CAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAA 72034 | | | ||| || ||||| | || ||||| |||||||| || | |||| ||||||| Sbjct 2186 CTTGGC-TTCGTTGGGACAGAATAAGGACCAGTCTCCATCTTCCTCCACTCTCTTCATAA 2128 Query 72035 AGAGATCAGGAATCC 72049 | ||||| || |||| Sbjct 2127 ACAGATCGGGGATCC 2113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671117580928520