Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protostelium_20mycophagum_20[genbank_20GCA_5F002081555.1_202017-04- 06] 2,577 sequences; 39,717,957 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq455 147 3e-30 seq1881 100 4e-16 seq1441 98.7 1e-15 >seq455 Length=31299 Score = 147 bits (162), Expect = 3e-30 Identities = 411/623 (66%), Gaps = 16/623 (3%) Strand=Plus/Minus Query 125232 TGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTG 125291 |||||||| || || ||||| ||||||||| | ||| | || | || ||| || Sbjct 8908 TGCTTTTATGGGTTTCAAATTGCCATTGAGAACATACACGCTGAGACTTATTCTCTCTTG 8849 Query 125292 ATTGACATGTACATTCGCGATCCGCAACGTAAACACA-TGCTCTTTAACGCAATCGACAC 125350 || |||| |||||| || || || || || || ||||||| | || |||||| Sbjct 8848 ATAGACACGTACATCAAGGACCC-CACCGAGAAGGCAATGCTCTTCCATGCCATCGACCA 8790 Query 125351 GGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTC 125410 | || | || || ||||| | |||| |||| |||||| |||| | | || Sbjct 8789 CATCCCCTGCATCAAAAAGAAGGCGGACTGGGCTCTTCGCTGGATCAATGATTCCGACTC 8730 Query 125411 TTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAG 125470 || || || | || || || ||||| |||||||||||||||||||| || ||| Sbjct 8729 TTT---CGGAGAACGCCTCGTCGCTTTCGCTGCCGTAGAGGGCATCTTCTTCTCTGGTTC 8673 Query 125471 TTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACA-GTA 125529 || ||||||||||| | |||||| | || |||||||| || || | |||| | Sbjct 8672 CTTCTGTTCCATCTTTTGGTTGAAGAAGAGAGGTCTCATGCCAGGTCTTTC-CACATCAA 8614 Query 125530 ACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCA 125589 |||| ||||| ||||| ||||| || || ||||| ||||||||| || || || || Sbjct 8613 ACGAATTTATTTCTCGCGACGAAGGACTCCACTGCGACTTTGCCTGCCTGCTCTT---CA 8557 Query 125590 ACTATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATG 125649 || ||| | ||| | | ||||| | || | || | || || | || | Sbjct 8556 AC---ATGCTACAAGAG---AAACCCAGCCAAGAGACCGTGAAGAAGATCATCCTTGACG 8503 Query 125650 CCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGA 125709 ||||| | || | |||||| | ||||| | | || || | ||||||| |||| Sbjct 8502 CCGTGGAGTGCGAGAAGGAGTTTGTCACCGAGGCTTTGCCAGTTGGTCTGATTGGAATGA 8443 Query 125710 ACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGA 125769 || ||| || ||| |||| || |||||||| || ||| | || || || | | Sbjct 8442 ACGCCAACCTGATGACACAGTATATCGAGTTTGTCGCCGATAGACTGCTCGTCGCCCTCA 8383 Query 125770 TTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAG 125829 ||| |||| | | | ||| |||| |||||||||| ||| | ||| || || Sbjct 8382 AGTGCCCCAAGCACTTCCATGCCGAGAACCCCTTTGATTGGATGGTCCTCATCTCTCTGC 8323 Query 125830 AGGGTAAGACCAACTTTTTCGAG 125852 | || ||||||||||| || ||| Sbjct 8322 AAGGAAAGACCAACTTCTTTGAG 8300 >seq1881 Length=25171 Score = 100 bits (110), Expect = 4e-16 Identities = 243/360 (68%), Gaps = 11/360 (3%) Strand=Plus/Plus Query 125217 ATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAA 125276 |||||||||| |||||||| || || || || || |||||| | || | ||| Sbjct 17689 ATTCCAGAGGCCAGATGCTTTTATGGCTTTCAGATTGCCATAGAGAACATACATGCCGAA 17748 Query 125277 ATGTACTCTACACTGATTGACATGTACATTCGCGATCCGCAACGTAAACACATGCTCTTT 125336 | |||||| ||||| |||| ||| || || ||| | || || ||| | | || Sbjct 17749 ACATACTCTCTTCTGATCGACACGTATATCCGAGATGAGAAAGAGAAGCACCTCTTATTC 17808 Query 125337 AACGCAATCGA-CACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGAT 125395 |||| ||||| ||| | || | |||| || ||||| | |||| || || ||||| Sbjct 17809 CACGCTATCGATCACATT-CCTTGCATACAAAAGAAGGCAGAGTGGGCAATGCGCTGGAT 17867 Query 125396 CGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCAT 125455 | | || | |||| | || ||||| || || || || || || ||||| || Sbjct 17868 CAACGATTCGGACTCTTTT---GGAGAGAGACTCGTTGCCTTTGCTGCTGTGGAGGGTAT 17924 Query 125456 CTTCTTTTC-GGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCG 125514 ||||||||| || | || ||| ||||||||||||| |||||| | ||||||||| | Sbjct 17925 CTTCTTTTCTGGTTCCTTCTGC-TCCATCTTTTGGCTGAAGAAGAGGGGACTCATGGAGG 17983 Query 125515 GACT--GACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGC 125572 | || || || || || || ||||| |||| || || ||||| || ||||| || Sbjct 17984 GTCTTGGAAAATCA--AATGAATTCATATCAAGAGATGAAGGGCTACATTGCGACTTCGC 18041 >seq1441 Length=33442 Score = 98.7 bits (108), Expect = 1e-15 Identities = 155/221 (70%), Gaps = 1/221 (0%) Strand=Plus/Plus Query 97158 AGACGAGTCGATGCACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGA 97217 |||||| || | || | || |||||| ||||| || ||||| | ||||| ||| Sbjct 2263 AGACGA-TCAAGGCCCAGGATCTGTGGTTCTCCATCTTGGACTCTCAGATTGAGACCGGA 2321 Query 97218 ACTCCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGC 97277 || || || || ||||||||||| ||| || | || |||||||||| || | || Sbjct 2322 ACACCTTATATGCTCTACAAGGACGCCGCCAACAGAAAGAGCAACCAACAGAACCTCGGA 2381 Query 97278 ACCATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACG 97337 ||||||||| ||| ||||||| || ||| | |||||| | | | ||| ||| Sbjct 2382 ACCATCAAGTCTAGCAACTTGTGCACCGAGATTATGGAGTACACTGCGCAGGATGAGGTT 2441 Query 97338 GCAGTTTGCGTTCTGGCATCGGTCAATCTGCCCAAGTTTGT 97378 || || ||| ||||||||| || |||||||||||||| Sbjct 2442 GCGGTGTGCAATCTGGCATCCATCGCCCTGCCCAAGTTTGT 2482 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741035328630520