Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protostelium_20mycophagum_20[genbank_20GCA_5F002081555.1_202017-04- 06] 2,577 sequences; 39,717,957 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq593 131 1e-25 seq1044 104 2e-17 seq1239 100 2e-16 seq2313 93.3 3e-14 seq2113 91.5 1e-13 seq1344 82.4 6e-11 >seq593 Length=28782 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || ||||| | | ||| |||||||| || || || || || || |||||||| |||||| Sbjct 15880 CCTCCTCTGAGACGTAAGACTAAATGGAGAGTCGATTCCTTCTGGATGTTGTAGTCGCTT 15939 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | |||| |||| |||||||| || || ||| | || | | || || ||| ||| Sbjct 15940 AAAGTTCTGCCGTCCTCTAATTGCTTTCCGGCGAAAATGAGTCTCTGCTGATCGGGTGGG 15999 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 ||||| |||||||| || ||| || ||| | || |||||||| | || || Sbjct 16000 ATTCCCTCTTTGTCTTGGATCTTGGCTTTGACATTGTCGATGGTATCTGAAGACTCGACT 16059 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||||||||||| || || || || |||||||| || ||||||||||| Sbjct 16060 TCTAAGGTAATTGTCTTGCCAGTGAGAGTTTTGACGAAAATTTGCAT 16106 Score = 95.1 bits (104), Expect = 9e-15 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||| | | ||| || ||||| || || || || || || |||||||||||||| Sbjct 16108 CCACCTCTAAGACGTAATACCAAATGGAGAGTAGACTCCTTCTGGATGTTGTAATCGCTC 16167 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | | | ||||||| || || || || ||| | || | | ||||| ||| ||| Sbjct 16168 AAAGTGCGGCCGTCTTCCAACTGCTTTCCGGCGAAGATGAGTCTCTGTTGATCGGGTGGG 16227 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 |||||||| ||||| || ||| ||||||| | || || || || | | || || Sbjct 16228 ATTCCTTCCTTGTCTTGGATCTTGGCCTTTACATTATCGATTGTGTCTGAACTCTCCACT 16287 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 || | || || || || || || || || || || || |||||||| || Sbjct 16288 TCGAGTGTGATTGTCTTTCCAGTTAGTGTCTTAACGAAGATTTGCATGTT 16337 >seq1044 Length=18651 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || |||||||| || ||||| ||||||||||| || || || | | | ||||| Sbjct 18577 ACCAAGTGAAGGGTAGACTCTTTCTGTATGTTGTAGTCACTCAGTGTGCGTCCATCTTCC 18518 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | ||| || |||||| | || | | ||||||||| ||| ||||| || ||||| Sbjct 18517 AGTTGCTTTCCAGCGAAGATGAGTCTCTGTTGGTCGGGTGGGATTCCCTCCTTGTCTTGT 18458 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || ||| |||||| | || |||||||| | | || || || || || || || || Sbjct 18457 ATCTTGGCTTTTACATTATCGATGGTATCTGAACTCTCGACTTCCAATGTGATTGTCTTG 18398 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 || || || || ||||| || |||||||| || Sbjct 18397 CCGGTGAGTGTCTTTACGAAGATTTGCATGTT 18366 >seq1239 Length=29077 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || ||||||||||| || || | ||||||||||| ||||| || || ||||| || Sbjct 23344 CCTCCTCTCAATCTCAACACGAGGTGAAGGGTGGACTCTTTCTGGATATTGTAGTCTGAG 23403 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | || |||| || | ||| || || ||| | || | | |||||||||| || Sbjct 23404 AGGGTCCTGCCGTCCTCGAGTTGCTTTCCGGCGAAAATGAGTCTTTGTTGGTCGGGAGGG 23463 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || || || ||||| ||| ||| ||| || | || ||||| || | || || Sbjct 23464 ATGCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCGATGGTGTCTGAGCTCTCCACC 23523 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 || || || ||||| || || |||| ||||||||||| || ||||| || Sbjct 23524 TCCAAAGTGATGGTCTTTCCGGTCAATGTTTTTACAAAGATCTGCATGTT 23573 >seq2313 Length=44285 Score = 93.3 bits (102), Expect = 3e-14 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 || || ||||| ||||| ||||||||||| ||||| || |||| | || || | || Sbjct 27619 TGGAGTGTGGACTCTTTCTGTATGTTGTAGTCGCTGAGGGTTCTTCCATCCTCCAGCTGC 27560 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || |||||| | || | | |||||||| || ||||| || || || || ||| Sbjct 27559 TTTCCAGCGAAGATGAGTCTCTGTTGGTCTGGGGGTATTCCCTCCTTATCTTGGATCTTG 27500 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||||||| | || ||||| || | || || || || || ||||| || || || Sbjct 27499 GCCTTTACATTGTCGATGGTGTCTGAGCTCTCGACTTCCAAAGTGATGGTCTTTCCGGTT 27440 Query 15341 AGAGTTTTTACAAAAATTTGCATATT 15366 | ||| ||||||||||| ||||| || Sbjct 27439 AAAGTCTTTACAAAAATCTGCATGTT 27414 >seq2113 Length=21246 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||| ||||| || || || || ||||| ||||| ||| |||| |||| || | || Sbjct 20896 TGAAGAGTGGACTCCTTCTGGATATTGTAGTCGCTGAGAGTTCTACCGTCCTCAAGCTGC 20837 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || || ||| | || | | ||||||||| || ||||| || || || ||| ||| Sbjct 20836 TTTCCGGCGAAAATGAGTCTCTGTTGGTCGGGGGGGATTCCCTCCTTATCTTGAATCTTG 20777 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||| ||| | || ||||| ||| || || || | ||| ||||| || || ||| Sbjct 20776 GCCTTCACATTGTCGATGGTGTCGGAGGACTCGACCTCGAGGGTGATGGTCTTTCCGGTC 20717 Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363 | ||| || || ||||||||||| Sbjct 20716 AAAGTCTTCACGAAAATTTGCAT 20694 >seq1344 Length=40060 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/211 (69%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCG--CGTCTT 15212 || || ||||||||||| || || || |||||||| || | ||| | || | || | Sbjct 24000 ACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTC--TGAGAGTGTGCGTCCATCCT 24057 Query 15213 CTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCAC 15272 | | ||| || || ||| | || | | ||||||||| ||||||||||| || || Sbjct 24058 CCAGTTGCTTTCCGGCGAAGATGAGTCTCTGTTGGTCGGGGGGAATTCCTTCCTTATCTT 24117 Query 15273 AAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTT 15332 || ||| || ||| | || || || || | ||| || || ||||| || || | Sbjct 24118 GGATCTTGGCTTTAACATTGTCGATAGTGTCTGAAGATTCGACTTCCAAGGTGATTGTCT 24177 Query 15333 TACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 | || || |||||||| ||||| |||||||| Sbjct 24178 TGCCGGTGAGAGTTTTGACAAAGATTTGCAT 24208 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362167824969957