Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protostelium_20mycophagum_20[genbank_20GCA_5F002081555.1_202017-04- 06] 2,577 sequences; 39,717,957 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq1564 96.9 3e-15 seq343 96.9 3e-15 seq593 91.5 1e-13 seq2113 82.4 6e-11 seq1766 82.4 6e-11 >seq1564 Length=26684 Score = 96.9 bits (106), Expect = 3e-15 Identities = 164/233 (70%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 ||||||||| || | | |||| ||| | || |||||||| ||||| ||||| || | Sbjct 11826 TTCCTCCTCTCAGACGAAGGACCAAGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCAG 11767 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 | || | ||||||| ||||| || || ||| ||||||||||||| || || || Sbjct 11766 AGAGAGTGCGGCCGTCCTCAAGCTGCTTTCCGGCAAAAATAAGTCTCTGTTGGTCGGGGG 11707 Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAG-GCTC- 18990 | | ||||| ||||| || || |||||| | | ||| |||| ||| |||| Sbjct 11706 GGATTCCCTCCTTGTCTTGGATCTTGGCTTTTACGTTGTCGATGGTAT---CAGAGCTCT 11650 Query 18991 CG-TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 || |||| ||| ||||| || || || ||||| ||||| || || |||||| Sbjct 11649 CGACCTCGAGGGTGATGGTCTTTCCAGTCAAAGTCTTGACGAAGATCTGCATT 11597 >seq343 Length=26413 Score = 96.9 bits (106), Expect = 3e-15 Identities = 165/239 (69%), Gaps = 3/239 (1%) Strand=Plus/Minus Query 18804 tttATTGTTTTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATAT 18863 |||||||| ||||||| ||| | | || | || | ||||||||||| ||||| | Sbjct 310 TTTATTGT---CCTCCTCTCAAGCGAAGAACGAGATGAAGAGTAGACTCCTTCTGAATGT 254 Query 18864 TGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCT 18923 | || || | | || | | ||||| ||||| || || ||| |||| |||||||| | Sbjct 253 TATAGTCTGAGAGGGTACGGCCATCCTCGAGCTGCTTTCCGGCAAAAATGAGTCTCTGTT 194 Query 18924 GATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGC 18983 |||| || | ||| |||||||| || || |||||| | | ||| ||| || Sbjct 193 GATCGGGTGGGATGCCTTCTTTGTCTTGTATCTTGGCTTTTACGTTGTCGATAGTGTCTG 134 Query 18984 CAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 | ||| ||||| ||| || || || || || ||||| ||||| ||||| |||||| Sbjct 133 AACTCTCTACTTCGAGGGTGATTGTCTTTCCAGTCAAAGTCTTGACGAAAATCTGCATT 75 >seq593 Length=28782 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 ||||||||| | | ||| || | || | || || ||||| || || ||||| || Sbjct 15878 TTCCTCCTCTGAGACGTAAGACTAAATGGAGAGTCGATTCCTTCTGGATGTTGTAGTCGC 15937 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 | ||| || ||||||| | || || || || |||| |||||||||||||| | Sbjct 15938 TTAAAGTTCTGCCGTCCTCTAATTGCTTTCCGGCGAAAATGAGTCTCTGCTGATCGGGTG 15997 Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG 18992 | | ||||||||||| || || ||| || | | ||| ||||| || ||| Sbjct 15998 GGATTCCCTCTTTGTCTTGGATCTTGGCTTTGACATTGTCGATGGTATCTGAAGACTCGA 16057 Query 18993 TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 ||| | |||||| || || || || | ||||||||| |||||||||||| Sbjct 16058 CTTCTAAGGTAATTGTCTTGCCAGTGAGAGTTTTGACGAAAATTTGCATT 16107 Score = 82.4 bits (90), Expect = 6e-11 Identities = 162/239 (68%), Gaps = 3/239 (1%) Strand=Plus/Plus Query 18803 ttttATTGTTTTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATA 18862 ||||||||| ||||||| | | | || | ||| | ||||| || || || || Sbjct 15415 TTTTATTGT---CCTCCTCTAAGACGCAGGACAAGGTGAAGAGTAGATTCTTTCTGGATG 15471 Query 18863 TTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGC 18922 ||||| || | | ||| || ||||||| ||||| || || ||| |||| |||||||| Sbjct 15472 TTGTAGTCAGAAAGAGTTCTGCCGTCCTCAAGCTGCTTTCCGGCAAAAATGAGTCTCTGT 15531 Query 18923 TGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCG 18982 || || || | || || ||||| ||| || || || | | ||| |||||| Sbjct 15532 TGGTCGGGAGGGATTCCTTCCTTGTCTTGAATCTTGGCCTTAACATTGTCGATAGTATCT 15591 Query 18983 CCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 | || ||| | ||| ||||| || || || | ||||||||||||||| ||||| Sbjct 15592 GAGGATTCTACTTCTAAGGTGATGGTCTTGCCGGTGAGAGTTTTGACAAAAATCTGCAT 15650 >seq2113 Length=21246 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 ||||||||| || | | || | ||| | || |||||||| || |||||||| || Sbjct 20922 TTCCTCCTCTCAGACGAAGTACAAGGTGAAGAGTGGACTCCTTCTGGATATTGTAGTCGC 20863 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 | ||| | ||||||| ||||| || || || |||| |||||||| || || || Sbjct 20862 TGAGAGTTCTACCGTCCTCAAGCTGCTTTCCGGCGAAAATGAGTCTCTGTTGGTCGGGGG 20803 Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG 18992 | | ||||| || || ||| || || || | | ||| || ||| | ||| Sbjct 20802 GGATTCCCTCCTTATCTTGAATCTTGGCCTTCACATTGTCGATGGTGTCGGAGGACTCGA 20743 Query 18993 TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 |||| ||| ||||| || || || ||||| || || |||||||||||| Sbjct 20742 CCTCGAGGGTGATGGTCTTTCCGGTCAAAGTCTTCACGAAAATTTGCATT 20693 >seq1766 Length=5059 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 ||||||||| | | ||| || | ||| | ||||||||||||||||||||||| || Sbjct 4708 TTCCTCCTCTGAGACGTAAAACTAAGTGGAGAGTAGACTCCTTTTGAATATTGTAGTCGC 4767 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 | ||| | ||||| | || || || || |||| |||||||| ||||| | Sbjct 4768 TAAGTGTGCGTCCATCCTCTAATTGCTTTCCGGCGAAAATGAGTCTCTGTTGATCGGGTG 4827 Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG 18992 | | ||||| ||||| || || |||||| | | ||| || || |||| Sbjct 4828 GGATTCCCTCCTTGTCTTGTATCTTGGCTTTTACATTGTCGATGGTGTCTGAGCTCTCCA 4887 Query 18993 TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 ||||| ||| || || || || || ||||| || || ||||| |||||| Sbjct 4888 CTTCGAGGGTGATTGTCTTTCCAGTCAAAGTCTTAACGAAAATCTGCATT 4937 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414559779434338