Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protostelium_20mycophagum_20[genbank_20GCA_5F002081555.1_202017-04- 06] 2,577 sequences; 39,717,957 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq1239 86.0 5e-12 seq593 86.0 5e-12 >seq1239 Length=29077 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 ||||||||||| ||||||||||| || || ||||| || || || ||||||||||| Sbjct 23116 CCTCCTCGTAATCTCAACACCAAGTGAAGAGTAGACTCCTTCTGAATGTTGTAATCTGAG 23175 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | ||| ||||||||| || || || ||| | || || |||||||| ||| || Sbjct 23176 AGAGTGCGGCCATCTTCCAACTGCTTTCCAGCAAAGATGAGTCTCTGTTGGTCGGGAGGG 23235 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGT-TCCGT 20160 | ||||| ||||| || || || || | | | | | || || | ||| Sbjct 23236 ATACCTTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATGGTGTC-TGAGCTCTCCAC 23294 Query 20161 TTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 |||| || ||||| || ||||||| || |||||||| || |||||| Sbjct 23295 CTCCAAAGTGATGGTCTTTCCGGTCAGGGTCTTGACAAAGATCTGCATT 23343 >seq593 Length=28782 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 19980 TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGC 20039 ||||||||| | | || || ||||| || || ||||| || || |||||||| |||| Sbjct 15878 TTCCTCCTCTGAGACGTAAGACTAAATGGAGAGTCGATTCCTTCTGGATGTTGTAGTCGC 15937 Query 20040 CCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099 | |||| | || || ||||| || || || |||| || ||||| |||||| | Sbjct 15938 TTAAAGTTCTGCCGTCCTCTAATTGCTTTCCGGCGAAAATGAGTCTCTGCTGATCGGGTG 15997 Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG 20159 | | || |||||||| || || ||| || | | | | | ||| || || Sbjct 15998 GGATTCCCTCTTTGTCTTGGATCTTGGCTTTGACATTGTCGATGGTATCTGAAGACTCGA 16057 Query 20160 TTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 ||| | |||||| || ||||| || | |||||||| |||||||||||| Sbjct 16058 CTTCTAAGGTAATTGTCTTGCCAGTGAGAGTTTTGACGAAAATTTGCATT 16107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419574021946137