Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protostelium_20mycophagum_20[genbank_20GCA_5F002081555.1_202017-04- 06] 2,577 sequences; 39,717,957 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq1239 149 6e-31 seq1378 140 3e-28 seq343 114 1e-20 seq1564 113 4e-20 seq2313 104 2e-17 seq2113 100 3e-16 seq1766 98.7 9e-16 seq1825 93.3 4e-14 >seq1239 Length=29077 Score = 149 bits (164), Expect = 6e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||||| |||| |||||||||||| | |||||| ||||| || | ||| ||||| Sbjct 23116 CCTCCTCGTAATCTCAACACCAAGTGAAGAGTAGACTCCTTCTGAATGTTGTAATCTGAG 23175 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | |||| | ||| |||| ||| ||||| ||||||| | ||| || || || ||||| Sbjct 23176 AGAGTGCGGCCATCTTCCAACTGCTTTCCAGCAAAGATGAGTCTCTGTTGGTCGGGAGGG 23235 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 |||||||| ||||| | || || ||||||||| | ||| ||||| | | || || Sbjct 23236 ATACCTTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATGGTGTCTGAGCTCTCCACC 23295 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | |||||||| ||||| || || || || |||||||||||||| Sbjct 23296 TCCAAAGTGATGGTCTTTCCGGTCAGGGTCTTGACAAAGATCTGCAT 23342 Score = 120 bits (132), Expect = 3e-22 Identities = 168/234 (72%), Gaps = 4/234 (2%) Strand=Plus/Plus Query 94777 CACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATC 94836 || |||||||||||||| |||||| | ||| | || || || || || | || || || Sbjct 23340 CATTCCTCCTCTCAATCTCAACACGAGGTGAAGGGTGGACTCTTTCTGGATATTGTAGTC 23399 Query 94837 GCTCATAGTGT--TGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCT 94894 | | || || || ||||| || || |||||| | || || | |||||| || || Sbjct 23400 --TGAGAGGGTCCTGCCGTCCTCGAGTTGCTTTCCGGCGAAAATGAGTCTTTGTTGGTCG 23457 Query 94895 GGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG 94954 ||||| || || || ||||| | ||| || ||||||||| | ||| ||||| | | Sbjct 23458 GGAGGGATGCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCGATGGTGTCTGAGCTC 23517 Query 94955 TCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 || || || | |||||||| ||||| || | ||||| ||||||||||||||| Sbjct 23518 TCCACCTCCAAAGTGATGGTCTTTCCGGTCAATGTTTTTACAAAGATCTGCATG 23571 >seq1378 Length=10532 Score = 140 bits (154), Expect = 3e-28 Identities = 170/230 (74%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 |||||||| |||| ||| || | || || ||||| ||||| || | |||||| || | Sbjct 10467 CCTCCTCTTAATCTCAATACAAGATGTAATGTAGACTCCTTCTGAATGTTATAGTC--TG 10410 Query 94841 ATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898 | || || | |||||| ||||| |||||| ||||||| | ||| || || || || | Sbjct 10409 AGAGGGTACGGCCATCCTCGAGCTGCTTTCCGGCAAAGATGAGTCTCTGTTGGTCGGGGG 10350 Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGA 94958 |||| ||||| ||||| | || || ||||||||| ||| ||||||| |||| Sbjct 10349 GAATTCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTATCGATGGTGTCAGATGATTCGA 10290 Query 94959 CGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 | || | |||||||| ||||| || ||||| ||||| |||||||||||| Sbjct 10289 CCTCTAAGGTGATGGTCTTTCCGGTGAGAGTCTTCACGAAGATCTGCATG 10240 >seq343 Length=26413 Score = 114 bits (126), Expect = 1e-20 Identities = 173/244 (71%), Gaps = 4/244 (2%) Strand=Plus/Minus Query 94766 TTAAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGC 94825 || ||| |||| |||||||||||| || | || | || | |||||| ||||| || Sbjct 317 TTCAAAATTTATTGTCCTCCTCTCAAGCGAAGAACGAGATGAAGAGTAGACTCCTTCTGA 258 Query 94826 ACGTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATC 94883 | |||||| || | | || || | |||||| ||||| |||||| |||| || | || Sbjct 257 ATGTTATAGTC--TGAGAGGGTACGGCCATCCTCGAGCTGCTTTCCGGCAAAAATGAGTC 200 Query 94884 TTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAG 94943 | || ||||| || || || ||||||||||| | || || || || ||| | ||| || Sbjct 199 TCTGTTGATCGGGTGGGATGCCTTCTTTGTCTTGTATCTTGGCTTTTACGTTGTCGATAG 140 Query 94944 TGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCT 95003 |||| | || || || | ||||| || |||||||| | ||| || || || |||| Sbjct 139 TGTCTGAACTCTCTACTTCGAGGGTGATTGTCTTTCCAGTCAAAGTCTTGACGAAAATCT 80 Query 95004 GCAT 95007 |||| Sbjct 79 GCAT 76 >seq1564 Length=26684 Score = 113 bits (124), Expect = 4e-20 Identities = 166/235 (71%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || ||||||||||| || | |||||||| | || || ||||| || | ||| | Sbjct 11832 TTTGCATTCCTCCTCTCAGACGAAGGACCAAGTGGAGGGTGGACTCCTTCTGAATGTTGT 11773 Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892 | || | |||| | ||||| ||||| |||||| |||| || | ||| || || | Sbjct 11772 AGTCAGAGAGAGTGCGGCCGTCCTCAAGCTGCTTTCCGGCAAAAATAAGTCTCTGTTGGT 11713 Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGT 94952 | || || || || || ||||| | || || || || ||| | ||| || |||| | Sbjct 11712 CGGGGGGGATTCCCTCCTTGTCTTGGATCTTGGCTTTTACGTTGTCGATGGTATCAGAGC 11653 Query 94953 GGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| || | |||||||| |||||||| | ||| || || ||||||||||| Sbjct 11652 TCTCGACCTCGAGGGTGATGGTCTTTCCAGTCAAAGTCTTGACGAAGATCTGCAT 11598 >seq2313 Length=44285 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 |||||||| | || | || | ||| | || || |||||||| | ||| || ||||| Sbjct 27871 CCTCCTCTGAGACGAAGAACAAGGTGGAGCGTGGACTCCTTTTGAATGTTGTAGTCGCTG 27812 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | || | ||||| ||||| |||||| | ||||| | ||| || || ||||| ||| Sbjct 27811 AGGGTTCTTCCGTCCTCTAGCTGCTTTCCGGCGAAGATGAGTCTCTGTTGGTCTGGTGGA 27752 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || ||||| ||||| | || || ||||||||| | | | || || | || || Sbjct 27751 ATGCCTTCCTTGTCTTGGATCTTAGCCTTGACGTTGTCTATTGTATCTGAAGATTCAACT 27692 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | ||||| || |||||||| || || || || ||||||||||| Sbjct 27691 TCGAGGGTGATTGTCTTTCCAGTGAGGGTCTTTACGAAGATCTGCAT 27645 Score = 98.7 bits (108), Expect = 9e-16 Identities = 161/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 94777 CACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATC 94836 || ||||||||| | || | || | ||| | || || || || || | ||| || || Sbjct 27647 CATTCCTCCTCTGAGACGAAGAACAAGGTGGAGTGTGGACTCTTTCTGTATGTTGTAGTC 27588 Query 94837 GCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGG 94896 ||| | || | |||||||||||| ||||| | ||||| | ||| || || ||||| Sbjct 27587 GCTGAGGGTTCTTCCATCCTCCAGCTGCTTTCCAGCGAAGATGAGTCTCTGTTGGTCTGG 27528 Query 94897 AGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTC 94956 || || || || || || | || || ||||| || | ||| ||||| | | || Sbjct 27527 GGGTATTCCCTCCTTATCTTGGATCTTGGCCTTTACATTGTCGATGGTGTCTGAGCTCTC 27468 Query 94957 GACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 ||| || | |||||||| ||||| || | ||| || ||||| ||||||||| Sbjct 27467 GACTTCCAAAGTGATGGTCTTTCCGGTTAAAGTCTTTACAAAAATCTGCATG 27416 >seq2113 Length=21246 Score = 100 bits (110), Expect = 3e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||| || || |||||| | ||||| |||||||| ||||| || ||||| || || ||| Sbjct 21076 TCCTCGAGTTGCTTTCCGGCGAAGATCAATCTTTGTTGATCAGGGGGAATTCCCTCCTTG 21017 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || || || ||| | ||| ||||||| | ||||| || | ||||| Sbjct 21016 TCTTGGATCTTCGCTTTTACGTTGTCGATGGTGTCAGAGCTCTCGACCTCGAGGGTGATA 20957 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || ||||| || || || || || ||||||||||| Sbjct 20956 GTCTTTCCGGTGAGGGTCTTGACGAAGATCTGCAT 20922 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 94777 CACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATC 94836 || ||||||||||| || | || | ||| | ||| || ||||| || | || || || Sbjct 20924 CATTCCTCCTCTCAGACGAAGTACAAGGTGAAGAGTGGACTCCTTCTGGATATTGTAGTC 20865 Query 94837 GCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGG 94896 ||| | ||| | ||||| ||||| |||||| | || || | ||| || || || || Sbjct 20864 GCTGAGAGTTCTACCGTCCTCAAGCTGCTTTCCGGCGAAAATGAGTCTCTGTTGGTCGGG 20805 Query 94897 AGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTC 94956 || || || || || || | ||| || ||||| || | ||| ||||| | | || Sbjct 20804 GGGGATTCCCTCCTTATCTTGAATCTTGGCCTTCACATTGTCGATGGTGTCGGAGGACTC 20745 Query 94957 GACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| || | |||||||| ||||| || | ||| ||||| || || ||||| Sbjct 20744 GACCTCGAGGGTGATGGTCTTTCCGGTCAAAGTCTTCACGAAAATTTGCAT 20694 >seq1766 Length=5059 Score = 98.7 bits (108), Expect = 9e-16 Identities = 161/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 94780 TCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCT 94839 |||||||||||| || | || | || | |||||| ||||| || | |||||| | || Sbjct 4481 TCCTCCTCTCAAGCGAAGAACGAGATGAAGAGTAGACTCCTTCTGAATGTTATAGT--CT 4538 Query 94840 CATAGTGTT--GGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGA 94897 | || ||| | ||||| | || |||||| |||| || | ||| || ||||| || Sbjct 4539 GAGAGGGTTCGGCCGTCCTCTAATTGCTTTCCGGCAAAAATGAGTCTCTGTTGATCAGGG 4598 Query 94898 GGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCG 94957 ||||| ||||| ||||| | || || || || || | ||| ||||| | | || Sbjct 4599 GGAATTCCTTCCTTGTCTTGGATCTTGGCTTTTACATTGTCGATGGTGTCTGAGCTCTCT 4658 Query 94958 ACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || | ||||| || |||||||| || || || || ||||| ||||| Sbjct 4659 ACTTCGAGTGTGATTGTCTTTCCAGTGAGGGTCTTGACGAAGATTTGCAT 4708 >seq1825 Length=10169 Score = 93.3 bits (102), Expect = 4e-14 Identities = 117/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 94766 TTAAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGC 94825 || ||| |||| |||||||||||| || | || | || | ||| || ||||| || Sbjct 161 TTCAAAATTTATTGTCCTCCTCTCAAGCGAAGAACGAGATGAAGAGTCGACTCCTTCTGG 102 Query 94826 ACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTT 94885 | |||||| ||||||| ||| |||||| ||||| |||||| |||| || | ||| Sbjct 101 ATGTTATAGTCGCTCAGTGTGCGTCCATCCTCGAGCTGCTTTCCGGCAAAAATGAGTCTC 42 Query 94886 TGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGC 94926 || ||||| || || || ||||| ||||| | ||| || || Sbjct 41 TGTTGATCGGGTGGGATTCCTTCCTTGTCTTGAATCTTGGC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448276759419720