Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protostelium_20mycophagum_20[genbank_20GCA_5F002081555.1_202017-04- 06] 2,577 sequences; 39,717,957 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq1571 143 4e-30 seq1724 134 2e-27 seq2180 113 7e-21 >seq1571 Length=22907 Score = 143 bits (158), Expect = 4e-30 Identities = 177/242 (73%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| ||||||| || ||||||||||| || ||| | ||||| ||||| | || |||| Sbjct 2906 GAGACAACATCCTCGGTATCACCAAGCCCGCCATCAGACGTCTTGCTCGCAGAGGAGGAG 2965 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 |||||||| |||||||| | |||| || |||| | | ||| | ||| |||| | Sbjct 2966 TCAAGCGTATCTCTGGACTCATCTACGAGGAGACCAGACAAGTTCTCAAGGTCTTTTTGG 3025 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| || |||| |||||| || ||| ||||||||||| | | | ||||||||||| Sbjct 3026 AGAATGTCATCCGTGATGCCGTCACCTACACCGAGCACGCCAGAAGAAAGACTGTCACTG 3085 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697 | |||||| ||||||| || ||||| | || || || | | || || || ||| ||| Sbjct 3086 CTATGGATGTCGTCTACGCTTTGAAGAGACAGGGACGCACTCTGTACGGATTCGGAGGTT 3145 Query 16698 AA 16699 || Sbjct 3146 AA 3147 >seq1724 Length=5414 Score = 134 bits (148), Expect = 2e-27 Identities = 175/242 (72%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| ||||||| |||||||||||||| || ||| | ||||| || || | || |||| Sbjct 1225 GAGACAACATCCTTGGAATCACCAAGCCCGCCATCAGACGTCTTGCCCGCAGAGGAGGAG 1166 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 |||||||| |||||||| | |||| || |||| | | || ||||| |||| | Sbjct 1165 TCAAGCGTATCTCTGGACTCATCTACGAGGAGACCAGACAAGTCCTGAAGGTCTTTTTGG 1106 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| || |||| |||||| || || || |||||||| | | | ||||| ||||| Sbjct 1105 AGAATGTGATCCGTGATGCCGTCACATACACTGAGCACGCCAGAAGAAAGACCGTCACTG 1046 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697 ||||||| ||||||| || | || || || || |||| |||| || || ||| ||| Sbjct 1045 CCATGGACGTCGTCTACGCTCTCAAGCGCCAGGGACGTACCCTTTACGGATTCGGAGGTT 986 Query 16698 AA 16699 || Sbjct 985 AA 984 >seq2180 Length=45085 Score = 113 bits (124), Expect = 7e-21 Identities = 170/242 (70%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| ||||||| || || |||||||| || ||| | ||||| || || | || |||| Sbjct 4518 GAGACAACATCCTCGGTATTACCAAGCCCGCCATCAGACGTCTTGCACGCAGAGGAGGAG 4577 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 |||||||| ||||||| | |||| || |||| | | || | ||| |||| | Sbjct 4578 TCAAGCGTATCTCTGGTCTTATCTACGAGGAGACCAGACAGGTCCTCAAGGTCTTTTTGG 4637 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| |||||||| ||| || || ||| || |||||||| | | | |||||||| || Sbjct 4638 AGAACGTTATCCGTGACGCCGTCACCTACACTGAGCACGCCAGAAGAAAGACTGTTACTG 4697 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697 | ||||| ||||||| || | || | || || || | | || ||||| ||| ||| Sbjct 4698 CTATGGACGTCGTCTACGCTCTCAAGAGACAGGGACGCACTCTCTACGGTTTCGGAGGTT 4757 Query 16698 AA 16699 || Sbjct 4758 AA 4759 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79072843830861