Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protostelium_20mycophagum_20[genbank_20GCA_5F002081555.1_202017-04- 06] 2,577 sequences; 39,717,957 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq1881 138 1e-27 seq455 122 1e-22 seq1441 100 4e-16 >seq1881 Length=25171 Score = 138 bits (152), Expect = 1e-27 Identities = 210/298 (70%), Gaps = 6/298 (2%) Strand=Plus/Minus Query 33369 CATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCC 33428 ||| || || | ||| || |||||||| ||||| ||| || |||||||||||||| || Sbjct 17979 CATGAGTCCCCTCTTCTTCAGCCAAAAGATGGAGCAGAAGGAACCAGAAAAGAAGATACC 17920 Query 33429 TTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTATCCA--- 33485 || || ||||||||||||| |||||||||||| || | | || | ||||| Sbjct 17919 CTCCACAGCAGCAAAGGCAACGAGTCTCTCTCCAAAAGAGTCCGAATCGTTGATCCAGCG 17860 Query 33486 CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAG 33545 | || ||||| || |||||||||| || ||||| || || || || | || | Sbjct 17859 CATT---GCCCACTCTGCCTTCTTTTGTATGCAAGGAATGTGATCGATAGCGTGGAATAA 17803 Query 33546 ATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGA 33605 || || || || |||| | ||| || ||||||| |||| || |||| | Sbjct 17802 GAGGTGCTTCTCTTTCTCATCTCGGATATACGTGTCGATCAGAAGAGAGTATGTTTCGGC 17743 Query 33606 ATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGT 33663 ||| ||||| || ||||| |||||||| || || || ||||| ||||| | ||||||| Sbjct 17742 ATGTATGTTCTCTATGGCAATCTGAAAGCCATAAAAGCATCTGGCCTCTGGAATCTGT 17685 >seq455 Length=31299 Score = 122 bits (134), Expect = 1e-22 Identities = 239/351 (68%), Gaps = 2/351 (1%) Strand=Plus/Plus Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363 || || || |||||||| || || ||||| | | ||| | |||||| || | || Sbjct 8568 CAGGCAAAGTCGCAGTGGAGTCCTTCGTCGCGAGAAATAAATTCGTTTGATGTGGAAAGA 8627 Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423 || ||||| || || | ||| || | |||||| |||||| ||| || ||||| |||||| Sbjct 8628 CCTGGCATGAGACCTCTCTTCTTCAACCAAAAGATGGAACAGAAGGAACCAGAGAAGAAG 8687 Query 33424 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTATC 33483 || || ||||| ||||| || || | || | ||||| || | || |||| ||| Sbjct 8688 ATGCCCTCTACGGCAGCGAAAGCGACGAGGCGTTCTCCGAAAGAGTCGGAATCATTGATC 8747 Query 33484 CACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAG 33543 || ||||||| || ||||||||||| | || || || || ||||||| ||| Sbjct 8748 CAGCGAAGAGCCCAGTCCGCCTTCTTTTTGATGCAGGGGATGTGGTCGATGGCATGGAAG 8807 Query 33544 AG-ATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTC 33602 || || | || || | || || | || || || ||||| ||| ||| | || Sbjct 8808 AGCATTG-CCTTCTCGGTGGGGTCCTTGATGTACGTGTCTATCAAGAGAGAATAAGTCTC 8866 Query 33603 CGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTC 33653 | || ||||| |||||||| || ||||| || || || |||| ||||| Sbjct 8867 AGCGTGTATGTTCTCAATGGCAATTTGAAACCCATAAAAGCATCGCGCCTC 8917 >seq1441 Length=33442 Score = 100 bits (110), Expect = 4e-16 Identities = 255/378 (67%), Gaps = 19/378 (5%) Strand=Plus/Minus Query 62877 ACAAACATGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA 62936 |||||| || || ||| | ||||||||||| || || || ||||||| | | |||| Sbjct 2482 ACAAACTTGGGCAGGGCGATGGATGCCAGATTGCACACCGCAACCTCAT---CCTGCGCA 2426 Query 62937 ---TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGA 62993 || | || ||||| ||||| | || ||| ||||||| ||||| | || ||||| Sbjct 2425 GTGTACTCCATAATCTCGGTGCACAAGTTGCTAGACTTGATGGTTCCGAGGTTCTGTTGG 2366 Query 62994 TTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGA 63053 || |||||| |||| || ||||| || || || | || || || || ||||||||| Sbjct 2365 TTGCTCTTTCTGTTGGCGGCGTCCTTGTAGAGCATATAAGGTGTTCCGGTCTCAATCTGA 2306 Query 63054 GATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATC---TCC-- 63108 || || | || | ||| | | | ||||| || | ||| | | ||| Sbjct 2305 GAGTCCAAGATGGAGAACCACAGATCCTGGGCCTTGATCGT--CTTTCTGGCGAGTCCCG 2248 Query 63109 -TTTCTCTTTCGTA-TAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCA- 63165 | | | |||||| | || | ||||| | || ||||| |||||||| || | || | Sbjct 2247 GTGTGGC-TTCGTACTTGT-TGTACAACTGCTCAAACTCCTCTCCCCAGACCTCGTGGAG 2190 Query 63166 ATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCA 63225 | || | | ||| | ||||| | || ||||| ||||| || |||| ||||| |||| Sbjct 2189 ACCCTTGGC-TTCGTTGGGACAGAATAAGGACCAGTCTCCATCTTCCTCCACTCTCTTCA 2131 Query 63226 TAAAGAGATCAGGAATCC 63243 |||| ||||| || |||| Sbjct 2130 TAAACAGATCGGGGATCC 2113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622927133313320