Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protostelium_20mycophagum_20[genbank_20GCA_5F002081555.1_202017-04- 06] 2,577 sequences; 39,717,957 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq1441 230 6e-55 >seq1441 Length=33442 Score = 230 bits (254), Expect = 6e-55 Identities = 570/863 (66%), Gaps = 53/863 (6%) Strand=Plus/Plus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 ||||| |||||||| || ||| | | ||| |||| || | | || ||||||||||| Sbjct 1663 TTCACACACGCCACACCCACACTTTTCAACTCTGGCACACCAAGACCTCAGATGTCTTCC 1722 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 ||||| ||| | | |||||||| ||||| ||||||||||||| ||||| || ||| | Sbjct 1723 TGCTTCCTTTTGGACATGAAGGAGGATTCTATCGAGGGTATCTACGACACTCTAAAGCAG 1782 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC- 363725 || ||||| || || || ||| || || || ||| | || |||||| | | || Sbjct 1783 TGCGCTCTCATCTCTAAATCTGCCGGAGGCATCGGTCTGTCTGCCCACAAGATCAGAGCT 1842 Query 363726 ACAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCG 363785 ||| |||||||||| | || ||| || ||| ||||| || || ||||||||| | Sbjct 1843 GCAG-ACAGTTACATCAGAGGAACAAATGGTGCCTCTAATGGACTCGTCCCCATGCTTAG 1901 Query 363786 TGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTT 363845 || || | | ||||| | || |||||||| || || || ||| | || || || || Sbjct 1902 AGTCTTCAATGACACTGCACGTTATGTCGACCAAGGAGGTGGTAAGAGGAAGGGTGCCTT 1961 Query 363846 TGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAA-AA 363904 ||| | ||||| ||||| |||||||| || |||||| | || ||| | || || Sbjct 1962 TGCCGTTTATCTGGAGCCATGGCATGCCGACATCACCGAGTTTTTGGATCTCAGAAAGAA 2021 Query 363905 ACACGGGAAAAGAGGAATTGCGTGCACGTGA--------------TCTG--------TTC 363942 ||| |||||||| || | | |||||||| |||| ||| Sbjct 2022 TCAC-GGAAAAGAAGAGAGGAGAGCACGTGACCTCTTTTACGCCCTCTGGTACGTAATTC 2080 Query 363943 TA---TGCACT---------TTGGGTTT----------CTGACCATTTTATGAAGCGCGT 363980 || | |||| ||| |||| | || | ||||||||| | || Sbjct 2081 TAAATTTCACTGGAATTTCATTGAGTTTCCCAGGATCCCCGATCTGTTTATGAAGAGAGT 2140 Query 363981 GGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCA-GGTCTTTCCGATG 364039 ||||| || | | ||||| | || || || ||||| | | | ||||| ||| | Sbjct 2141 GGAGGAAGATGGAGACTGGTCCTTATTCTGTCCCAACGAA-GCCAAGGGTCTCCACGAGG 2199 Query 364040 TATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAA---TCGGAGGGAAAGGCTC 364096 | ||||| || || | || | ||| | ||||| ||| | |||| || Sbjct 2200 TCTGGGGAGAGGAGTTTGAGCAGTTGTACAACAAGTACGAAGCCACACCGGGACTCGCCA 2259 Query 364097 GTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAG 364156 | ||||| || || ||| | || ||||| ||||| |||| || ||||||||||| | Sbjct 2260 GAAAGACGATCAAGGCCCAGGATCTGTGGTTCTCCATCTTGGACTCTCAGATTGAGACCG 2319 Query 364157 GAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTG 364216 ||||||| |||||| | ||||| || | |||| | ||| |||||| ||| |||| | Sbjct 2320 GAACACCTTATATGCTCTACAAGGACGCCGCCAACAGAAAGAGCAACCAACAGAACCTCG 2379 Query 364217 GTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGA 364276 | || || || |||||| | || ||||||||||| || ||||| || | || ||| Sbjct 2380 GAACCATCAAGTCTAGCAACTTGTGCACCGAGATTATGGAGTACACTGCGCAGGATGAGG 2439 Query 364277 CTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTAAAAGATGGTACTTTTG 364336 ||| || || || || || || ||||| || || |||||| || || | |||| Sbjct 2440 TTGCGGTGTGCAATCTGGCATCCATCGCCCTGCCCAAGTTTGTCAAGGACAACAAATTTG 2499 Query 364337 ACCACCAGCATCTTTATGACGTA 364359 ||||||| | || || || ||| Sbjct 2500 ACCACCACAAGCTGTACGAGGTA 2522 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303310566115214