Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protostelium_20mycophagum_20[genbank_20GCA_5F002081555.1_202017-04- 06] 2,577 sequences; 39,717,957 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq1766 107 2e-18 seq343 100 2e-16 seq1239 91.5 1e-13 seq593 89.7 4e-13 >seq1766 Length=5059 Score = 107 bits (118), Expect = 2e-18 Identities = 165/233 (71%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 ||||||||| || ||||| || ||||| ||||| || || || ||||| ||| | Sbjct 4709 AATGCAAATCTTCGTCAAGACCCTCACTGGAAAGACAATCACACTCGAAGTAGAGAGCTC 4650 Query 115345 CGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATC 115403 ||||| | | |||| |||||| || || || || ||||| | ||| ||||| Sbjct 4649 AGACACCATCG-ACAATGTAAAAGCCAAGATCCAAGACAAGGAAGGAATTCCCCCTGATC 4591 Query 115404 AGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATA 115463 | || ||||| |||| ||| || || |||||||| || | | |||| | | || |||| Sbjct 4590 AACAGAGACTCATTTTTGCCGGAAAGCAATTAGAGGACGGCCGAACCCTCTCAGACTATA 4531 Query 115464 ACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAAAA 115516 ||||||| || ||||||||| | ||| | || | | ||| |||||||| || Sbjct 4530 ACATTCAGAAGGAGTCTACTCTTCATCTCGTTCTTCGCTTGAGAGGAGGACAA 4478 >seq343 Length=26413 Score = 100 bits (110), Expect = 2e-16 Identities = 166/235 (71%), Gaps = 6/235 (3%) Strand=Plus/Plus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAA--ACGGAGTCC 115342 |||||| ||||| ||||| || | || ||||| || || ||| ||||| | |||| | Sbjct 75 AATGCAGATTTTCGTCAAGACTTTGACTGGAAAGACAATCACCCTCGAAGTAGAGAGTTC 134 Query 115343 AGCGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGA 115401 || ||||| | | |||| |||||| || || || ||||||||| |||| || Sbjct 135 AG--ACACTATCG-ACAACGTAAAAGCCAAGATACAAGACAAAGAAGGCATCCCACCCGA 191 Query 115402 TCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTA 115461 ||| || ||||| |||| ||| || || || | || |||| | ||| | | || || Sbjct 192 TCAACAGAGACTCATTTTTGCCGGAAAGCAGCTCGAGGATGGCCGTACCCTCTCAGACTA 251 Query 115462 TAACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAAAA 115516 ||||||||| || ||||||||| | ||| | || | | ||| |||||||| || Sbjct 252 TAACATTCAGAAGGAGTCTACTCTTCATCTCGTTCTTCGCTTGAGAGGAGGACAA 306 >seq1239 Length=29077 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 |||||| || |||||||| || || || ||||| ||||| || | || |||| | Sbjct 23343 AATGCAGATCTTTGTCAAGACCCTGACCGGAAAGACCATCACTTTGGAGGTGGAGAGCTC 23284 Query 115345 CGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATC 115403 ||||| | | |||| || || || || || || ||||| |||| || | Sbjct 23283 AGACACCATCG-ACAACGTCAAGGCCAAGATCCAAGACAAGGAAGGTATCCCTCCCGACC 23225 Query 115404 AGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATA 115463 | || ||||| || | ||| || || || || ||||||| | || | | ||||| | Sbjct 23224 AACAGAGACTCATCTTTGCTGGAAAGCAGTTGGAAGATGGCCGCACTCTCTCAGATTACA 23165 Query 115464 ACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 ||||||| || ||||||||| | || ||||||||||||| |||||||| Sbjct 23164 ACATTCAGAAGGAGTCTACTCTTCACTTGGTGTTGAGATTACGAGGAGG 23116 >seq593 Length=28782 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 ||||||||| || ||||| || ||||| ||||| || || || ||||| ||| | Sbjct 28660 AATGCAAATCTTCGTCAAGACCCTCACTGGAAAGACAATCACACTCGAAGTAGAGAGCTC 28601 Query 115345 CGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATC 115403 || || | | |||| |||||| || || || || ||||| | ||| ||||| Sbjct 28600 AGATACCATCG-ACAATGTAAAAGCCAAGATACAAGACAAGGAAGGAATTCCCCCTGATC 28542 Query 115404 AGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATA 115463 | || ||||| || | || || || |||||||| || | | |||| | | || |||| Sbjct 28541 AACAGAGACTCATCTTCGCCGGAAAGCAATTAGAGGACGGCCGAACCCTCTCAGACTATA 28482 Query 115464 ACATTCAAAAAGAGTCTACTATACATATGGT 115494 ||||||| || ||||||||| | ||| |||| Sbjct 28481 ACATTCAGAAGGAGTCTACTCTTCATCTGGT 28451 Score = 86.0 bits (94), Expect = 5e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 |||||||||||| |||||||| ||||| || || || |||||| | ||| ||||| Sbjct 16107 AATGCAAATTTTCGTCAAAACTCTCACTGGCAAGACAATTACCTTAGAAGTCGAGTCTTC 16048 Query 115345 CGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATC 115403 || || | ||||| || ||| || || || ||||| || |||| |||| Sbjct 16047 AGATAC-CATCGACAATGTCAAAGCCAAGATCCAAGACAAAGAGGGAATCCCACCCGATC 15989 Query 115404 AGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATA 115463 |||| ||||| |||| || || || |||||||| || | || ||| | ||| || | Sbjct 15988 AGCAGAGACTCATTTTCGCCGGAAAGCAATTAGAGGACGGCAGAACTTTAAGCGACTACA 15929 Query 115464 ACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAA 115514 |||| || || || || ||| | ||| | || || | | ||||||||| Sbjct 15928 ACATCCAGAAGGAATCGACTCTCCATTTAGTCTTACGTCTCAGAGGAGGAA 15878 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425330641141240