Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protostelium_20mycophagum_20[genbank_20GCA_5F002081555.1_202017-04- 06] 2,577 sequences; 39,717,957 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq717 122 8e-23 seq2313 113 4e-20 seq1441 96.9 3e-15 seq1564 95.1 1e-14 seq593 91.5 1e-13 seq1344 87.8 2e-12 >seq717 Length=13837 Score = 122 bits (134), Expect = 8e-23 Identities = 157/217 (72%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 131019 ACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGA 131078 ||| || || | || | ||| ||||| ||||| |||||||| ||| | ||||||| Sbjct 175 ACGAAGAACAAGGTGGAGGGTGGACTCTTTTTGGATGTTGTAGTCGGAGAGGGTGCGCCC 234 Query 131079 GTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTT 131138 ||||||| |||||| || ||| |||| || | ||| || || |||||||||||||| || Sbjct 235 ATCCTCTAACTGCTTTCCGGCGAAGATCAATCTCTGTTGATCGGGAGGGATTCCTTCCTT 294 Query 131139 GTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAAC 131198 ||| || || ||||| | || | || |||| |||||| | || | |||| Sbjct 295 GTCTTGAATCTTGGCCTTGACGTTATCGATGGTGTCGGAGGACTCTACTTCCAAAGTAAT 354 Query 131199 GGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || || || || || || |||||||||||||||||| Sbjct 355 AGTCTTTCCTGTGAGGGTCTTTACGAAAATCTGCATG 391 >seq2313 Length=44285 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 131038 GTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCT 131097 || |||||||||||||||||||| ||||| | ||| | ||||||||||||||| || Sbjct 27841 GTGGACTCCTTTTGAATGTTGTAGTCGCTGAGGGTTCTTCCGTCCTCTAGCTGCTTTCCG 27782 Query 131098 GCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTG 131157 ||| |||| | | ||| ||||| || || || ||||| ||||| ||| || |||| Sbjct 27781 GCGAAGATGAGTCTCTGTTGGTCTGGTGGAATGCCTTCCTTGTCTTGGATCTTAGCCTTG 27722 Query 131158 AGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTT 131217 | | || | ||||| | || || | |||| ||| | || || || || || || Sbjct 27721 ACGTTGTCTATTGTATCTGAAGATTCAACTTCGAGGGTGATTGTCTTTCCAGTGAGGGTC 27662 Query 131218 TTTACGAAAATCTGCAT 131234 |||||||| |||||||| Sbjct 27661 TTTACGAAGATCTGCAT 27645 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 131038 GTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCT 131097 || ||||| || || |||||||| ||||| | ||| | ||||| |||||||| || Sbjct 27613 GTGGACTCTTTCTGTATGTTGTAGTCGCTGAGGGTTCTTCCATCCTCCAGCTGCTTTCCA 27554 Query 131098 GCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTG 131157 ||| |||| | | ||| ||||| || || ||||| || || || ||| || ||| Sbjct 27553 GCGAAGATGAGTCTCTGTTGGTCTGGGGGTATTCCCTCCTTATCTTGGATCTTGGCCTTT 27494 Query 131158 AGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTT 131217 | | || | || || | | ||||| || | || | ||| || ||||||| ||| Sbjct 27493 ACATTGTCGATGGTGTCTGAGCTCTCGACTTCCAAAGTGATGGTCTTTCCGGTTAAAGTC 27434 Query 131218 TTTACGAAAATCTGCATG 131235 ||||| |||||||||||| Sbjct 27433 TTTACAAAAATCTGCATG 27416 >seq1441 Length=33442 Score = 96.9 bits (106), Expect = 3e-15 Identities = 128/175 (73%), Gaps = 2/175 (1%) Strand=Plus/Minus Query 145624 GGCGATCGACGCCAAATTACAAACTGCCGTCTCCTCG-GCGTCGCTGTATTGTACGATCT 145682 |||||| || |||| ||| || || || ||| || ||| | |||| | | |||| Sbjct 2468 GGCGATGGATGCCAGATTGCACACCGCAACCTCATCCTGCGCAG-TGTACTCCATAATCT 2410 Query 145683 CGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGC 145742 ||| |||||| |||||| | ||||||||||| || || || || || || || |||||| Sbjct 2409 CGGTGCACAAGTTGCTAGACTTGATGGTTCCGAGGTTCTGTTGGTTGCTCTTTCTGTTGG 2350 Query 145743 ACGCGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTGCGTCTCCACGAT 145797 ||||||||||||||||| || ||| || ||||| | ||| | |||| ||| Sbjct 2349 CGGCGTCCTTGTAGAGCATATAAGGTGTTCCGGTCTCAATCTGAGAGTCCAAGAT 2295 >seq1564 Length=26684 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || | || ||| || || || || | ||| |||||||| ||||||||||| || Sbjct 11824 CCTCCTCTCAGACGAAGGACCAAGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCAGAG 11765 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| |||||| |||||||| || || | || | | ||| ||||| || ||| Sbjct 11764 AGAGTGCGGCCGTCCTCAAGCTGCTTTCCGGCAAAAATAAGTCTCTGTTGGTCGGGGGGG 11705 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 ||||| || ||||| ||| || || | | || | ||||| | | ||||| Sbjct 11704 ATTCCCTCCTTGTCTTGGATCTTGGCTTTTACGTTGTCGATGGTATCAGAGCTCTCGACC 11645 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| ||| | ||| || || || | ||| || ||||| |||||||| Sbjct 11644 TCGAGGGTGATGGTCTTTCCAGTCAAAGTCTTGACGAAGATCTGCAT 11598 >seq593 Length=28782 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| | | ||| | || ||||| | || |||||||| || ||||||||||||||| Sbjct 16108 CCACCTCTAAGACGTAATACCAAATGGAGAGTAGACTCCTTCTGGATGTTGTAATCGCTC 16167 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||| || | |||||| || ||| |||| | | ||| || || || ||| Sbjct 16168 AAAGTGCGGCCGTCTTCCAACTGCTTTCCGGCGAAGATGAGTCTCTGTTGATCGGGTGGG 16227 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 |||||||| ||||| ||| || ||| | | || | || || | ||| | Sbjct 16228 ATTCCTTCCTTGTCTTGGATCTTGGCCTTTACATTATCGATTGTGTCTGAACTCTCCACT 16287 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 |||| || | || || || ||||| || || ||||| || |||||| Sbjct 16288 TCGAGTGTGATTGTCTTTCCAGTTAGTGTCTTAACGAAGATTTGCATG 16335 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 131079 GTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTT 131138 |||||| |||||||| || || | || | | ||| ||||| |||||||||||||| || Sbjct 15495 GTCCTCAAGCTGCTTTCCGGCAAAAATGAGTCTCTGTTGGTCGGGAGGGATTCCTTCCTT 15554 Query 131139 GTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAAC 131198 ||| || || ||| | | || | |||||| | ||| || | || | ||| | Sbjct 15555 GTCTTGAATCTTGGCCTTAACATTGTCGATAGTATCTGAGGATTCTACTTCTAAGGTGAT 15614 Query 131199 GGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 ||| || ||||| |||||||| || ||||||||||| Sbjct 15615 GGTCTTGCCGGTGAGAGTTTTGACAAAAATCTGCAT 15650 >seq1344 Length=40060 Score = 87.8 bits (96), Expect = 2e-12 Identities = 151/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 131019 ACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGA 131078 ||| || || || || | ||| |||||||| ||||||||||| || | ||||| Sbjct 23993 ACGAAGTACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCTGAGAGTGTGCGTCC 24052 Query 131079 GTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTT 131138 ||||| || ||||| || ||| |||| | | ||| ||||| || || |||||||| || Sbjct 24053 ATCCTCCAGTTGCTTTCCGGCGAAGATGAGTCTCTGTTGGTCGGGGGGAATTCCTTCCTT 24112 Query 131139 GTCGGTGATTTTCTGCTTGAGC-TGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAA 131197 || ||| || |||| | | | || | ||| || | || |||| || | ||| | Sbjct 24113 ATCTTGGATCTT-GGCTTTAACATTGTCGATAGTGTCTGAAGATTCGACTTCCAAGGTGA 24171 Query 131198 CGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || || ||||| |||||||| || || || ||||| Sbjct 24172 TTGTCTTGCCGGTGAGAGTTTTGACAAAGATTTGCAT 24208 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471997595287680