Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protostelium_20mycophagum_20[genbank_20GCA_5F002081555.1_202017-04- 06] 2,577 sequences; 39,717,957 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq1239 98.7 8e-16 seq593 98.7 8e-16 seq2113 91.5 1e-13 seq2313 89.7 4e-13 seq1564 86.0 5e-12 seq1766 82.4 6e-11 >seq1239 Length=29077 Score = 98.7 bits (108), Expect = 8e-16 Identities = 161/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 |||||||||| |||| |||| || || || |||||||| || |||||||| || | Sbjct 23116 CCTCCTCGTAATCTCAACACCAAGTGAAGAGTAGACTCCTTCTGAATGTTGTAATCTGAG 23175 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | || ||||| || || || ||| | || || | ||||||||| ||| Sbjct 23176 AGAGTGCGGCCATCTTCCAACTGCTTTCCAGCAAAGATGAGTCTCTGTTGGTCGGGAGGG 23235 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | || || ||||| || || || ||| || | | | | ||||| | |||| Sbjct 23236 ATACCTTCCTTGTCTTGGATCTTGGC--CTTGACGTTGTCGATGGTGTCTGAGCTCTCCA 23293 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 |||| |||||||| ||||||||||| || |||||||| ||||||||| Sbjct 23294 CCTCCAAAGTGATGGTCTTTCCGGTCAGGGTCTTGACAAAGATCTGCATT 23343 >seq593 Length=28782 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||||| || | ||| || | || || || || || || || ||||||||||| | Sbjct 15424 CCTCCTCTAAGACGCAGGACAAGGTGAAGAGTAGATTCTTTCTGGATGTTGTAGTCAGAA 15483 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| || ||||||| | || || || ||| |||| || | ||||||||| ||| Sbjct 15484 AGAGTTCTGCCGTCCTCAAGCTGCTTTCCGGCAAAAATGAGTCTCTGTTGGTCGGGAGGG 15543 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | || || ||||| ||| | ||| || | | | | ||| || || || | Sbjct 15544 ATTCCTTCCTTGTCTTGAATCTTGGCCTTAACATTGTCGATAGTATCTGAGGATTCTACT 15603 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||||||||| || ||||| || |||||||||||||||||||| Sbjct 15604 TCTAAGGTGATGGTCTTGCCGGTGAGAGTTTTGACAAAAATCTGCAT 15650 >seq2113 Length=21246 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||||| || | ||||| | || || ||||||||||| || || ||||||||| Sbjct 20920 CCTCCTCTCAGACGAAGTACAAGGTGAAGAGTGGACTCCTTCTGGATATTGTAGTCGCTG 20861 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | ||||||| | || || || || |||| || | ||||||||| || Sbjct 20860 AGAGTTCTACCGTCCTCAAGCTGCTTTCCGGCGAAAATGAGTCTCTGTTGGTCGGGGGGG 20801 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | ||||| || || ||| | |||||| | | | | |||||| || ||| Sbjct 20800 ATTCCCTCCTTATCTTGAATCTTGGCCTTCACATTGTCGATGGTGTCGGAGGACTCGACC 20741 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 || | ||||||||| |||||||||| || || || ||||| |||||| Sbjct 20740 TCGAGGGTGATGGTCTTTCCGGTCAAAGTCTTCACGAAAATTTGCATT 20693 >seq2313 Length=44285 Score = 89.7 bits (98), Expect = 4e-13 Identities = 162/235 (69%), Gaps = 4/235 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||||| || | || || | || || |||||||| || ||||||||||||||| Sbjct 27643 CCTCCTCTGAGACGAAGAACAAGGTGGAGTGTGGACTCTTTCTGTATGTTGTAGTCGCTG 27584 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | |||| | | ||||||| || || || || | || || | ||||||||| || Sbjct 27583 AGGGTTCTTCCATCCTCCAGCTGCTTTCCAGCGAAGATGAGTCTCTGTTGGTCTGGGGGT 27524 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||||| || || || || || ||| || | | | | ||||| | ||| Sbjct 27523 ATTCCCTCCTTATCTTGGATCTTGGC--CTTTACATTGTCGATGGTGTCTGAGCTCTCGA 27466 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTGTA 16941 ||||| |||||||| |||||||| | || || |||||||||||||| ||||| Sbjct 27465 CTTCCAAAGTGATGGTCTTTCCGGTTAAAGTCTTTACAAAAATCTGCATGTTGTA 27411 >seq1564 Length=26684 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||||| || | || || | || || ||||||||||| || || |||||||| | Sbjct 12052 CCTCCTCTGAGACGGAGCACAAGGTGAAGAGTGGACTCCTTCTGGATATTGTAGTCAGAG 11993 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | ||||||| | || || || || | || || | ||||||||| || Sbjct 11992 AGAGTGCGGCCGTCCTCGAGCTGCTTTCCAGCGAAGATGAGTCTCTGTTGGTCGGGGGGG 11933 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||||| ||||| || || || ||| || | | | | |||||| || |||| Sbjct 11932 ATTCCCTCCTTGTCTTGGATCTTAGC--CTTGACGTTGTCGATGGTGTCGGAGGACTCCA 11875 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 ||||| |||||||| || ||||| || || |||||||| || |||||| Sbjct 11874 CTTCCAAAGTGATGGTCTTGCCGGTGAGGGTCTTGACAAAGATTTGCATT 11825 >seq1766 Length=5059 Score = 82.4 bits (90), Expect = 6e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||||| || | ||||||| || || || |||||||| |||||||||||||||| Sbjct 4938 CCTCCTCTGAGACGAAGTACCAAGTGAAGAGTAGACTCCTTCTGTATGTTGTAGTCGGAA 4997 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTC 16821 | |||| | | ||||| ||||| || || || |||| || | ||||||||| Sbjct 4998 AGGGTTCTTCCATCCTCTAATTGCTTTCCAGCGAAAATGAGTCTCTGTTGGTC 5050 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405075277325230