Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protostelium_20mycophagum_20[genbank_20GCA_5F002081555.1_202017-04- 06] 2,577 sequences; 39,717,957 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq2577 131 1e-25 seq593 125 5e-24 seq1239 109 4e-19 seq343 107 1e-18 seq1766 100 2e-16 seq1564 95.1 8e-15 seq717 82.4 5e-11 >seq2577 Length=13544 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||| ||||||||||||| | |||||||| Sbjct 1561 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAAATAGTAGATAGGGACAGTAGGAATCTCGT 1620 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 1621 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 1655 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||||||||||| ||||||||||||||||||||||||||||| |||| Sbjct 3798 CTCTCTTTTCAAAGTTCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGATCTCTA 3857 Query 20007 GGTAATATTTAGCCTTA 20023 ||||||||||| ||| Sbjct 3858 ACTAATATTTAGCTTTA 3874 >seq593 Length=28782 Score = 125 bits (138), Expect = 5e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 || ||||| | ||| | || | ||||||||| |||||| || |||||||| || || Sbjct 15652 CCTCCTCTGAGACGGAGGACGAGATGAAGAGTAGACTCCTTCTGGATATTGTAGTCGGAA 15711 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | | |||| |||| || | || ||||||||||| || || | |||||||||| ||| Sbjct 15712 AGAGTACGTCCGTCCTCAAGCTGCTTTCCGGCAAAGATGAGTCTCTGTTGATCGGGTGGG 15771 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||||| ||||| ||| || ||||||||| | | ||| ||| ||| || ||| Sbjct 15772 ATTCCTTCCTTGTCTTGAATCTTGGCCTTCACATTATCTATAGTGTCTGAACTCTCTACT 15831 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || | || || || || || ||||| || || ||||| |||||||| Sbjct 15832 TCGAGGGTGATTGTCTTTCCTGTCAAAGTCTTGACGAAAATCTGCAT 15878 Score = 95.1 bits (104), Expect = 8e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 || ||||| | ||||| || | |||||||| || || || || ||||| ||||| Sbjct 15424 CCTCCTCTAAGACGCAGGACAAGGTGAAGAGTAGATTCTTTCTGGATGTTGTAGTCAGAA 15483 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | | | |||| || | || ||||||||||| || || | ||||| |||| ||| Sbjct 15484 AGAGTTCTGCCGTCCTCAAGCTGCTTTCCGGCAAAAATGAGTCTCTGTTGGTCGGGAGGG 15543 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||||| ||||| ||| || ||| ||||| | || ||||||| ||| ||| Sbjct 15544 ATTCCTTCCTTGTCTTGAATCTTGGCCTTAACATTGTCGATAGTATCTGAGGATTCTACT 15603 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||||| || || || || || || | ||||| || || |||||||| Sbjct 15604 TCTAAGGTGATGGTCTTGCCGGTGAGAGTTTTGACAAAAATCTGCAT 15650 >seq1239 Length=29077 Score = 109 bits (120), Expect = 4e-19 Identities = 166/235 (71%), Gaps = 1/235 (0%) Strand=Plus/Plus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| || |||||||| | |||||| | ||||| ||| ||| || || |||||||| | Sbjct 23340 CATT-CCTCCTCTCAATCTCAACACGAGGTGAAGGGTGGACTCTTTCTGGATATTGTAGT 23398 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 | || | | |||| || | ||| |||||||| || || || | |||||| |||| Sbjct 23399 CTGAGAGGGTCCTGCCGTCCTCGAGTTGCTTTCCGGCGAAAATGAGTCTTTGTTGGTCGG 23458 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 |||| ||| || |||||| ||| || ||| || || | || || ||| || | Sbjct 23459 GAGGGATGCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCGATGGTGTCTGAGCTCT 23518 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 | || || || || || || || || ||||| ||||| || || ||||||||||| Sbjct 23519 CCACCTCCAAAGTGATGGTCTTTCCGGTCAATGTTTTTACAAAGATCTGCATGTT 23573 >seq343 Length=26413 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 || |||||||| || | || | ||||||||| |||||| ||||| || || || || Sbjct 302 CCTCCTCTCAAGCGAAGAACGAGATGAAGAGTAGACTCCTTCTGAATGTTATAGTCTGAG 243 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | ||| | || || | || ||||||||||| || || | |||||||||| ||| Sbjct 242 AGGGTACGGCCATCCTCGAGCTGCTTTCCGGCAAAAATGAGTCTCTGTTGATCGGGTGGG 183 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | |||||||||||| || || || || || | || ||| ||| ||| || ||| Sbjct 182 ATGCCTTCTTTGTCTTGTATCTTGGCTTTTACGTTGTCGATAGTGTCTGAACTCTCTACT 123 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || | || || || || || ||||| || || ||||| |||||||| Sbjct 122 TCGAGGGTGATTGTCTTTCCAGTCAAAGTCTTGACGAAAATCTGCAT 76 >seq1766 Length=5059 Score = 100 bits (110), Expect = 2e-16 Identities = 162/232 (70%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| || ||||| | ||| || || || || ||||| |||||||||||||||||| | Sbjct 4706 CATT-CCTCCTCTGAGACGTAAAACTAAGTGGAGAGTAGACTCCTTTTGAATATTGTAGT 4764 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 | | ||| | || |||||||| |||||||| || || || | |||||||||| Sbjct 4765 CGCTAAGTGTGCGTCCATCCTCTAATTGCTTTCCGGCGAAAATGAGTCTCTGTTGATCGG 4824 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 |||| || || ||||| || || || ||||| | || || ||| || | Sbjct 4825 GTGGGATTCCCTCCTTGTCTTGTATCTTGGCTTTTACATTGTCGATGGTGTCTGAGCTCT 4884 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | ||||| | || || || || || ||||| || || ||||| |||||||| Sbjct 4885 CCACTTCGAGGGTGATTGTCTTTCCAGTCAAAGTCTTAACGAAAATCTGCAT 4936 Score = 98.7 bits (108), Expect = 7e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 || |||||||| || | || | ||||||||| |||||| ||||| || || || || Sbjct 4482 CCTCCTCTCAAGCGAAGAACGAGATGAAGAGTAGACTCCTTCTGAATGTTATAGTCTGAG 4541 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | || |||| |||||||| ||||||||||| || || | |||||||| | ||| Sbjct 4542 AGGGTTCGGCCGTCCTCTAATTGCTTTCCGGCAAAAATGAGTCTCTGTTGATCAGGGGGA 4601 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||||| ||||| || || || ||||| | || || ||| || || ||| Sbjct 4602 ATTCCTTCCTTGTCTTGGATCTTGGCTTTTACATTGTCGATGGTGTCTGAGCTCTCTACT 4661 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || | ||| || || || || || | ||| || ||||| || ||||| Sbjct 4662 TCGAGTGTGATTGTCTTTCCAGTGAGGGTCTTGACGAAGATTTGCAT 4708 >seq1564 Length=26684 Score = 95.1 bits (104), Expect = 8e-15 Identities = 161/232 (69%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| || ||||||| ||| | ||||| || || ||| |||||| ||||| ||||| | Sbjct 11828 CATT-CCTCCTCTCAGACGAAGGACCAAGTGGAGGGTGGACTCCTTCTGAATGTTGTAGT 11770 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 |||| | | || |||| || | || ||||||||||| || || | ||||| |||| Sbjct 11769 CAGAGAGAGTGCGGCCGTCCTCAAGCTGCTTTCCGGCAAAAATAAGTCTCTGTTGGTCGG 11710 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 ||||| || || ||||| || || || || || | || ||||| || | Sbjct 11709 GGGGGATTCCCTCCTTGTCTTGGATCTTGGCTTTTACGTTGTCGATGGTATCAGAGCTCT 11650 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || || | || || || || || ||||| || || ||||| |||||||| Sbjct 11649 CGACCTCGAGGGTGATGGTCTTTCCAGTCAAAGTCTTGACGAAGATCTGCAT 11598 >seq717 Length=13837 Score = 82.4 bits (90), Expect = 5e-11 Identities = 160/235 (68%), Gaps = 1/235 (0%) Strand=Plus/Plus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| || ||||| | ||| | || | || || ||| ||| ||||| || ||||| | Sbjct 160 CATT-CCTCCTCTGAGACGAAGAACAAGGTGGAGGGTGGACTCTTTTTGGATGTTGTAGT 218 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 | || | || | || ||||| || |||||||| || || | | |||||||||| Sbjct 219 CGGAGAGGGTGCGCCCATCCTCTAACTGCTTTCCGGCGAAGATCAATCTCTGTTGATCGG 278 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 |||| ||||| ||||| ||| || ||| || || | || || || | Sbjct 279 GAGGGATTCCTTCCTTGTCTTGAATCTTGGCCTTGACGTTATCGATGGTGTCGGAGGACT 338 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 | ||||| || |||||||| || || || | ||| || ||||| ||||||||||| Sbjct 339 CTACTTCCAAAGTAATAGTCTTTCCTGTGAGGGTCTTTACGAAAATCTGCATGTT 393 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334936680250487