Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protostelium_20mycophagum_20[genbank_20GCA_5F002081555.1_202017-04- 06] 2,577 sequences; 39,717,957 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq1766 141 8e-29 seq2113 122 8e-23 seq593 120 3e-22 seq1344 114 1e-20 seq1564 111 1e-19 seq343 100 2e-16 seq2313 96.9 3e-15 >seq1766 Length=5059 Score = 141 bits (156), Expect = 8e-29 Identities = 173/233 (74%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || || || ||||||||||| || || | ||||| ||||||||||| || Sbjct 4937 AATGCAGATTTTCGTTAAGACTTTGACTGGAAAGACAATCACCCTCGAAGTGGAGAGCTC 4878 Query 25058 TGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| ||||| || || |||| || | || ||||| || || || ||||| || Sbjct 4877 AGACACCATCGA--CAATGTAAAAGCCAAGATACAA-GACAAGGAGGGAATCCCACCCGA 4821 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 |||||| | | ||||| ||||| || |||||||| |||| ||||| | |||| || Sbjct 4820 TCAACAGAGACTCATTTTCGCCGGAAAGCAATTAGAGGATGGACGCACACTTAGCGACTA 4761 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 |||||||||||| || || || || || ||||| || | || |||||||||| Sbjct 4760 CAATATTCAAAAGGAGTCTACTCTCCACTTAGTTTTACGTCTCAGAGGAGGAA 4708 Score = 104 bits (114), Expect = 2e-17 Identities = 164/232 (71%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| || || ||||| | || || || | |||||| ||||||| ||| || Sbjct 4709 AATGCAAATCTTCGTCAAGACCCTCACTGGAAAGACAATCACACTCGAAGTAGAGAGCTC 4650 Query 25058 TGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| ||||| || || |||| || | || ||||| ||||| ||||| ||||| Sbjct 4649 AGACACCATCGA--CAATGTAAAAGCCAAGATCCAA-GACAAGGAAGGAATTCCCCCTGA 4593 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 |||||| | | ||||||||||| || |||||||| || | || || | || || Sbjct 4592 TCAACAGAGACTCATTTTTGCCGGAAAGCAATTAGAGGACGGCCGAACCCTCTCAGACTA 4533 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGA 25226 || ||||| || || || || || ||| | || || | | ||||||||| Sbjct 4532 TAACATTCAGAAGGAGTCTACTCTTCATCTCGTTCTTCGCTTGAGAGGAGGA 4481 >seq2113 Length=21246 Score = 122 bits (134), Expect = 8e-23 Identities = 167/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| || || |||||||||||||| || ||||||| |||| || ||||| || Sbjct 20693 AATGCAAATTTTCGTGAAGACTTTGACCGGAAAGACCATCACCCTCGAGGTCGAGTCCTC 20752 Query 25058 TGACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||| ||||| |||| || || | ||| || || || || || || || |||| Sbjct 20753 CGACACCATCGACAATGTGAAGGCCAAGATTCA-AGATAAGGAGGGAATCCCCCCCGACC 20811 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 ||||| | | ||||| ||||| || || | || || | | | ||| | |||| |||| Sbjct 20812 AACAGAGACTCATTTTCGCCGGAAAGCAGCTTGAGGACGGTAGAACTCTCAGCGACTACA 20871 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 |||| || || || ||||| || || | || || | || |||||||||| Sbjct 20872 ATATCCAGAAGGAGTCCACTCTTCACCTTGTACTTCGTCTGAGAGGAGGAA 20922 >seq593 Length=28782 Score = 120 bits (132), Expect = 3e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| | || || || | |||||| ||||||||||| || Sbjct 16334 ATGCAAATCTTCGTTAAGACACTAACTGGAAAGACAATCACACTCGAAGTGGAGAGTTCA 16275 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| | ||| || ||| ||||| ||||| || ||||| || ||| Sbjct 16274 GACACAATCGATAATGTAAAGGCCAAGATCCAAGACAAGGAAGGAATCCCACCCGATCAA 16215 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| | | || || ||||| || || || ||||| | |||||| || |||||||||| Sbjct 16214 CAGAGACTCATCTTCGCCGGAAAGCAGTTGGAAGACGGCCGCACTTTGAGCGATTACAAC 16155 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 || || || || || || || ||||| || || | || ||||| |||| Sbjct 16154 ATCCAGAAGGAGTCTACTCTCCATTTGGTATTACGTCTTAGAGGTGGAA 16106 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || || || ||||||||||| || || | ||||| ||||||| ||| || Sbjct 15879 AATGCAGATTTTCGTCAAGACTTTGACAGGAAAGACAATCACCCTCGAAGTAGAGAGTTC 15820 Query 25058 TGACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 |||||||| || |||| || || | ||| ||||| ||||| || ||||| || | Sbjct 15819 AGACACTATAGATAATGTGAAGGCCAAGATTCA-AGACAAGGAAGGAATCCCACCCGATC 15761 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 ||||| | | || |||||||| || || | || || | || ||| | ||| |||| Sbjct 15760 AACAGAGACTCATCTTTGCCGGAAAGCAGCTTGAGGACGGACGTACTCTTTCCGACTACA 15701 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 |||| || || || || || || ||| | || || | || |||||||| Sbjct 15700 ATATCCAGAAGGAGTCTACTCTTCATCTCGTCCTCCGTCTCAGAGGAGG 15652 Score = 98.7 bits (108), Expect = 9e-16 Identities = 162/231 (70%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| || ||| | ||||| || ||||||| | ||||| || || || Sbjct 15650 ATGCAGATTTTTGTCAAAACTCTCACCGGCAAGACCATCACCTTAGAAGTAGAATCCTCA 15591 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || |||||||| || || | || || | ||| ||||| ||||| || || || ||| Sbjct 15590 GATACTATCGA--CAATGTTAAGGCCAAGATTCAA-GACAAGGAAGGAATCCCTCCCGAC 15534 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 |||||| | | ||||||||||| || || | || || | | ||| | || ||| Sbjct 15533 CAACAGAGACTCATTTTTGCCGGAAAGCAGCTTGAGGACGGCAGAACTCTTTCTGACTAC 15474 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGA 25226 || || || |||||||| || || || | || || | || ||||||||| Sbjct 15473 AACATCCAGAAAGAATCTACTCTTCACCTTGTCCTGCGTCTTAGAGGAGGA 15423 Score = 93.3 bits (102), Expect = 4e-14 Identities = 95/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 25104 ATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACT 25163 || ||||| || |||||| | | ||||| ||||| || |||||||| |||| ||||| Sbjct 28782 ATCCCACCCGATCAACAGAGACTCATTTTCGCCGGAAAGCAATTAGAGGATGGACGCACA 28723 Query 25164 GTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGA 25223 | |||| |||||||||||||| || || || || || ||||| || | || |||||| Sbjct 28722 CTTAGCGACTACAATATTCAAAAGGAGTCTACTCTCCACTTAGTTTTACGTCTCAGAGGA 28663 Query 25224 GGAA 25227 |||| Sbjct 28662 GGAA 28659 Score = 84.2 bits (92), Expect = 2e-11 Identities = 95/125 (76%), Gaps = 2/125 (2%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| ||||| |||||| | ||||| || | |||||| |||| || ||||| || Sbjct 28432 AATGCAAATTTTTGTCAAGACTCTCACCGGCAAGACAATCACACTCGAGGTCGAGTCTTC 28373 Query 25058 TGACACTATCGAGT-CACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 || || ||||| | | |||| || | || ||||||||||| || ||||| |||| Sbjct 28372 AGATACAATCGACAACGTTAAAGCCAAGATACAA-GACAAAGAAGGCATCCCACCCGACC 28314 Query 25117 AACAG 25121 ||||| Sbjct 28313 AACAG 28309 >seq1344 Length=40060 Score = 114 bits (126), Expect = 1e-20 Identities = 167/233 (72%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| ||||| || ||| | ||||| || | ||||| | ||||| || || || Sbjct 24209 AATGCAAATCTTTGTCAAAACTCTCACCGGCAAGACAATCACCTTGGAAGTCGAATCTTC 24150 Query 25058 TGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||||||||| || || |||| || ||| || || ||||| ||||| || || Sbjct 24149 AGACACTATCGA--CAATGTTAAAGC-CAAGATCCAAGATAAGGAAGGAATTCCCCCCGA 24093 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||||||| | | || || ||||| || ||| | || |||| ||||| | || || Sbjct 24092 CCAACAGAGACTCATCTTCGCCGGAAAGCAACTGGAGGATGGACGCACACTCTCAGACTA 24033 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 ||| ||||| || || ||||| || || || || || | || |||||||||| Sbjct 24032 CAACATTCAGAAGGAGTCCACCCTTCACTTGGTACTTCGTCTCAGAGGAGGAA 23980 >seq1564 Length=26684 Score = 111 bits (122), Expect = 1e-19 Identities = 166/233 (71%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || || || ||||||||||| || || ||||||| |||| || ||| || Sbjct 11597 AATGCAGATCTTCGTCAAGACTTTGACTGGAAAGACCATCACCCTCGAGGTCGAGAGCTC 11656 Query 25058 TGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||| || ||||| || | |||| || | || ||||| || || || || || || Sbjct 11657 TGATACCATCGA--CAACGTAAAAGCCAAGATCCAA-GACAAGGAGGGAATCCCCCCCGA 11713 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||||||| | ||||||||||||| || || | || || | |||||| | || || Sbjct 11714 CCAACAGAGACTTATTTTTGCCGGAAAGCAGCTTGAGGACGGCCGCACTCTCTCTGACTA 11773 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 ||| ||||| || || ||||| || || || || || | || |||||||||| Sbjct 11774 CAACATTCAGAAGGAGTCCACCCTCCACTTGGTCCTTCGTCTGAGAGGAGGAA 11826 Score = 111 bits (122), Expect = 1e-19 Identities = 165/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| ||||| ||||| | ||||| || ||||||| | ||||||||||| || Sbjct 11825 AATGCAAATCTTTGTCAAGACCCTCACCGGCAAGACCATCACTTTGGAAGTGGAGTCCTC 11884 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| ||||| | ||| || ||| ||||| || || || || || ||||| Sbjct 11885 CGACACCATCGACAACGTCAAGGCTAAGATCCAAGACAAGGAGGGAATCCCCCCCGACCA 11944 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 |||| | | || || || || || || | || || | |||||| | || ||||| Sbjct 11945 ACAGAGACTCATCTTCGCTGGAAAGCAGCTCGAGGACGGCCGCACTCTCTCTGACTACAA 12004 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAAATTA 25231 ||| || || || ||||| || || | ||||| | || ||||||||||| || Sbjct 12005 TATCCAGAAGGAGTCCACTCTTCACCTTGTGCTCCGTCTCAGAGGAGGAAACTA 12058 >seq343 Length=26413 Score = 100 bits (110), Expect = 2e-16 Identities = 163/232 (70%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || || || ||||||||||| || || | ||||| ||||||| ||| || Sbjct 75 AATGCAGATTTTCGTCAAGACTTTGACTGGAAAGACAATCACCCTCGAAGTAGAGAGTTC 134 Query 25058 TGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||||||||| || | |||| || | || ||||||||||| || ||||| || Sbjct 135 AGACACTATCGA--CAACGTAAAAGCCAAGATACAA-GACAAAGAAGGCATCCCACCCGA 191 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 |||||| | | ||||||||||| || || | || |||| || || | || || Sbjct 192 TCAACAGAGACTCATTTTTGCCGGAAAGCAGCTCGAGGATGGCCGTACCCTCTCAGACTA 251 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGA 25226 || ||||| || || || || || ||| | || || | | ||||||||| Sbjct 252 TAACATTCAGAAGGAGTCTACTCTTCATCTCGTTCTTCGCTTGAGAGGAGGA 303 >seq2313 Length=44285 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/231 (70%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || |||||||||||||| ||||| || ||||||| | ||||| ||| || Sbjct 27417 ATGCAGATTTTTGTAAAGACTTTAACCGGAAAGACCATCACTTTGGAAGTCGAGAGCTCA 27476 Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||| ||||| || || ||| || ||| || || || || || || || |||| Sbjct 27477 GACACCATCGA--CAATGTAAAGGCCAAGATCCAAGATAAGGAGGGAATACCCCCAGACC 27534 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 ||||| | | || || || || || || | || |||| | || | |||| |||| Sbjct 27535 AACAGAGACTCATCTTCGCTGGAAAGCAGCTGGAGGATGGAAGAACCCTCAGCGACTACA 27594 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 | || || ||||| ||||| || || | || || | || |||||||||| Sbjct 27595 ACATACAGAAAGAGTCCACACTCCACCTTGTTCTTCGTCTCAGAGGAGGAA 27645 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433314390386255