Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protostelium_20mycophagum_20[genbank_20GCA_5F002081555.1_202017-04- 06] 2,577 sequences; 39,717,957 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq1239 95.1 9e-15 seq593 93.3 3e-14 seq1766 91.5 1e-13 seq1344 89.7 4e-13 seq2313 84.2 2e-11 seq1024 82.4 5e-11 >seq1239 Length=29077 Score = 95.1 bits (104), Expect = 9e-15 Identities = 88/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 21949 ACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATT 22008 ||||||||||||| ||||||||||| || || | |||||| ||| | | |||| Sbjct 23227 ACCAACAGAGACTCATCTTTGCTGGAAAGCAGTTGGAAGATGGCCGCACTCTCTCAGATT 23168 Query 22009 ACAATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 |||| ||||||||||| ||||||||||| |||| || | ||||||||||| Sbjct 23167 ACAACATTCAGAAGGAGTCTACTCTTCACTTGGTGTTGAGATTACGAGGAGG 23116 >seq593 Length=28782 Score = 93.3 bits (102), Expect = 3e-14 Identities = 161/234 (69%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| | ||||| | || ||||| ||||| ||| | ||| ||| || || Sbjct 15650 ATGCAGATTTTTGTCAAAACTCTCACCGGCAAGACCATCACCTTAGAAGTAGAATCCTCA 15591 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || ||||| || ||| || || || || | ||| ||||| Sbjct 15590 GATACTATCGACAATGTTAAGGCCAAGATTCAAGACAAGGAAGGAATCCCTCCCGACCAA 15531 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 |||||||| || ||||| || || || || || || | |||| | | || ||||| Sbjct 15530 CAGAGACTCATTTTTGCCGGAAAGCAGCTTGAGGACGGCAGAACTCTTTCTGACTACAAC 15471 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGATATTAA 22067 || ||||| |||||||||||||| | || | ||| | |||||||| | ||| Sbjct 15470 ATCCAGAAAGAATCTACTCTTCACCTTGTCCTGCGTCTTAGAGGAGGACAATAA 15417 >seq1766 Length=5059 Score = 91.5 bits (100), Expect = 1e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 21949 ACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATT 22008 ||||||||||||| || || ||||| || ||| |||| ||| || ||| | |||| | Sbjct 5049 ACCAACAGAGACTCATTTTCGCTGGAAAGCAATTAGAGGATGGAAGAACCCTTTCCGACT 4990 Query 22009 ACAATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 |||| || |||||||| ||||||||||| ||||| | ||| | |||||||| Sbjct 4989 ACAACATACAGAAGGAGTCTACTCTTCACTTGGTACTTCGTCTCAGAGGAGGA 4937 >seq1344 Length=40060 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||| ||| | ||||| | || ||||| || || ||| ||||| ||| | | Sbjct 24209 AATGCAAATCTTTGTCAAAACTCTCACCGGCAAGACAATCACCTTGGAAGTCGAATCTTC 24150 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 ||| || | | | || |||| || || ||||| || || | || |||| Sbjct 24149 AGACACTATCGACAATGTTAAAGCCAAGATCCAAGATAAGGAAGGAATTCCCCCCGACCA 24090 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||||||||| ||||| || || || ||||| || ||| | || | | || ||||| Sbjct 24089 ACAGAGACTCATCTTCGCCGGAAAGCAACTGGAGGATGGACGCACACTCTCAGACTACAA 24030 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 ||||||||||| || || ||||| ||||| | ||| | |||||||| Sbjct 24029 CATTCAGAAGGAGTCCACCCTTCACTTGGTACTTCGTCTCAGAGGAGGA 23981 >seq2313 Length=44285 Score = 84.2 bits (92), Expect = 2e-11 Identities = 160/236 (68%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 21826 AGTGCAAAATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGG 21885 ||| ||| ||||| || ||| | || || ||||| || || ||||| || ||||| | Sbjct 27409 AGTACAACATGCAGATTTTTGTAAAGACTTTAACCGGAAAGACCATCACTTTGGAAGTCG 27468 Query 21886 AAGCCGCAGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTG 21945 | | |||| || | | | || | ||| || || ||||| ||||| |||| Sbjct 27469 AGAGCTCAGACACCATCGACAATGTAAAGGCCAAGATCCAAGATAAGGAGGGAATACCCC 27528 Query 21946 TAAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCG 22005 | ||||||||||||| ||||| ||||| || || || || ||| || ||| | || Sbjct 27529 CAGACCAACAGAGACTCATCTTCGCTGGAAAGCAGCTGGAGGATGGAAGAACCCTCAGCG 27588 Query 22006 ATTACAATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 | ||||| || ||||| || || || || || | || | ||| | |||||||| Sbjct 27589 ACTACAACATACAGAAAGAGTCCACACTCCACCTTGTTCTTCGTCTCAGAGGAGGA 27644 >seq1024 Length=14032 Score = 82.4 bits (90), Expect = 5e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 21949 ACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATT 22008 ||||||||||||| ||||| || || || || | ||||| | |||| || ||| | Sbjct 13896 ACCAACAGAGACTCATCTTCGCCGGAAAGCAGTTGGAAGACGGCAGAACTTTGAGCGACT 13955 Query 22009 ACAATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 | || || ||||||||||| ||||| || ||||||||||| | |||||||| Sbjct 13956 ATAACATCCAGAAGGAATCGACTCTCCACTTGGTATTACGTCTTAGAGGAGGA 14008 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358113552307258