Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protostelium_20mycophagum_20[genbank_20GCA_5F002081555.1_202017-04- 06] 2,577 sequences; 39,717,957 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq1239 109 5e-19 seq1344 104 2e-17 seq593 104 2e-17 seq2313 96.9 3e-15 seq1766 95.1 1e-14 seq717 87.8 2e-12 >seq1239 Length=29077 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| || |||| |||||| || || || | ||||| || || |||||||||||||| Sbjct 23115 ACCTCCTCGTAATCTCAACACCAAGTGAAGAGTAGACTCCTTCTGAATGTTGTAATCTGA 23174 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 | ||| || |||||| | || || ||||| ||||||| | ||||||||| ||||| Sbjct 23175 GAGAGTGCGGCCATCTTCCAACTGCTTTCCAGCAAAGATGAGTCTCTGTTGGTCGGGAGG 23234 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 || ||||| ||||| ||||| || | | || | |||||| | | || || Sbjct 23235 GATACCTTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATGGTGTCTGAGCTCTCCAC 23294 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 |||| || | || || |||||||| || || ||||| |||||||| Sbjct 23295 CTCCAAAGTGATGGTCTTTCCGGTCAGGGTCTTGACAAAGATCTGCAT 23342 >seq1344 Length=40060 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || ||||||||||| || | || || ||| || ||||| || || Sbjct 24012 GTGGACTCCTTCTGAATGTTGTAGTCTGAGAGTGTGCGTCCATCCTCCAGTTGCTTTCCG 24071 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| ||||||| | ||||||||| || ||||| ||||| || || ||||| ||| Sbjct 24072 GCGAAGATGAGTCTCTGTTGGTCGGGGGGAATTCCTTCCTTATCTTGGATCTTGGCTTTA 24131 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | ||||| | |||||||| |||| ||| | || |||||||| |||||| Sbjct 24132 ACATTGTCGATAGTGTCTGAAGATTCGACTTCCAAGGTGATTGTCTTGCCGGTGAGAGTT 24191 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| || ||||| Sbjct 24192 TTGACAAAGATTTGCAT 24208 >seq593 Length=28782 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 ||||||||||| || |||||||| || | ||| | || ||||| || || || Sbjct 15454 GTAGATTCTTTCTGGATGTTGTAGTCAGAAAGAGTTCTGCCGTCCTCAAGCTGCTTTCCG 15513 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || | ||||| | ||||||||| ||||| || ||||| ||||| |||||| || Sbjct 15514 GCAAAAATGAGTCTCTGTTGGTCGGGAGGGATTCCTTCCTTGTCTTGAATCTTGGCCTTA 15573 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | || || | |||||| || || | ||| | || |||||||| |||||| Sbjct 15574 ACATTGTCGATAGTATCTGAGGATTCTACTTCTAAGGTGATGGTCTTGCCGGTGAGAGTT 15633 Query 114366 TTTACAAAAATCTGCAT 114382 || |||||||||||||| Sbjct 15634 TTGACAAAAATCTGCAT 15650 >seq2313 Length=44285 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || ||||| || |||||||| ||||| | || | ||| || || || || ||| Sbjct 27613 GTGGACTCTTTCTGTATGTTGTAGTCGCTGAGGGTTCTTCCATCCTCCAGCTGCTTTCCA 27554 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| ||||||| | ||||||||| || || || || || || || ||||| ||| Sbjct 27553 GCGAAGATGAGTCTCTGTTGGTCTGGGGGTATTCCCTCCTTATCTTGGATCTTGGCCTTT 27494 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | |||||| | | ||||| |||| || | || || ||||| | ||| Sbjct 27493 ACATTGTCGATGGTGTCTGAGCTCTCGACTTCCAAAGTGATGGTCTTTCCGGTTAAAGTC 27434 Query 114366 TTTACAAAAATCTGCATG 114383 |||||||||||||||||| Sbjct 27433 TTTACAAAAATCTGCATG 27416 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 114185 CGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACC 114244 ||| || || |||||||||||||| ||||| | || | || || || || || || Sbjct 27842 CGTGGACTCCTTTTGAATGTTGTAGTCGCTGAGGGTTCTTCCGTCCTCTAGCTGCTTTCC 27783 Query 114245 AGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTT 114304 ||| ||||||| | ||||||||| || ||||||||||| ||||| ||||| || Sbjct 27782 GGCGAAGATGAGTCTCTGTTGGTCTGGTGGAATGCCTTCCTTGTCTTGGATCTTAGCCTT 27723 Query 114305 TAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGT 114364 | | || | || || | ||||| || || | ||| | || || || || || || Sbjct 27722 GACGTTGTCTATTGTATCTGAAGATTCAACTTCGAGGGTGATTGTCTTTCCAGTGAGGGT 27663 Query 114365 TTTTACAAAAATCTGCAT 114382 ||||| || |||||||| Sbjct 27662 CTTTACGAAGATCTGCAT 27645 >seq1766 Length=5059 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 114171 AAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCT 114230 |||||||| || | ||||| || |||||||| ||||| ||||| | || || ||| Sbjct 4725 AAAACTAAGTGGAGAGTAGACTCCTTTTGAATATTGTAGTCGCTAAGTGTGCGTCCATCC 4784 Query 114231 TCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCG 114290 || | ||| || || ||| | ||||| | |||||| || || || || || || ||||| Sbjct 4785 TCTAATTGCTTTCCGGCGAAAATGAGTCTCTGTTGATCGGGTGGGATTCCCTCCTTGTCT 4844 Query 114291 GCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTT 114350 ||||| ||||| | || | |||||| | | || || || | ||| | || Sbjct 4845 TGTATCTTGGCTTTTACATTGTCGATGGTGTCTGAGCTCTCCACTTCGAGGGTGATTGTC 4904 Query 114351 TTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || |||| ||| || || ||||||||||| Sbjct 4905 TTTCCAGTCAAAGTCTTAACGAAAATCTGCAT 4936 >seq717 Length=13837 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || |||||||| |||||||| ||| | || || ||| || | || || || Sbjct 194 GTGGACTCTTTTTGGATGTTGTAGTCGGAGAGGGTGCGCCCATCCTCTAACTGCTTTCCG 253 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| |||| | | |||||| || ||||| || ||||| ||||| |||||| || Sbjct 254 GCGAAGATCAATCTCTGTTGATCGGGAGGGATTCCTTCCTTGTCTTGAATCTTGGCCTTG 313 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | |||||||| ||| || || |||| || | || || || || || || Sbjct 314 ACGTTATCGATGGTGTCGGAGGACTCTACTTCCAAAGTAATAGTCTTTCCTGTGAGGGTC 373 Query 114366 TTTACAAAAATCTGCATG 114383 ||||| |||||||||||| Sbjct 374 TTTACGAAAATCTGCATG 391 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420121204760124