Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protostelium_20mycophagum_20[genbank_20GCA_5F002081555.1_202017-04- 06] 2,577 sequences; 39,717,957 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq455 172 1e-37 seq1441 118 2e-21 seq1881 109 1e-18 >seq455 Length=31299 Score = 172 bits (190), Expect = 1e-37 Identities = 359/526 (68%), Gaps = 14/526 (3%) Strand=Plus/Minus Query 42500 TGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTA 42559 ||||||||| ||||| || || || || || ||||| |||||| | ||| ||||| || Sbjct 8918 TGAGGCGCGATGCTTTTATGGGTTTCAAATTGCCATTGAGAACATACACGCTGAGACTTA 8859 Query 42560 CGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGC--GTAACGGGCTGTTCAAG 42617 | || | ||||||||||| ||| ||| |||| | || | || ||| | Sbjct 8858 TTCTCTCTTGATAGACACGTACATCAAGGACCCCACCGAGAAGGCAATG--CTCTTCCAT 8801 Query 42618 GCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAG 42677 ||||| || || ||||||||||| ||||||||||||||||| || ||||||| | Sbjct 8800 GCCATCGACCACATCCCCTGCATCAAAAAGAAGGCGGACTGGGCTCTTCGCTGGATCAAT 8741 Query 42678 AGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTC 42737 | ||||| | ||||| || | || || || || | ||||| |||||||||||| Sbjct 8740 GATTCCGACTCT---TTCGGAGAACGCCTCGTCGCTTTCGCTGCCGTAGAGGGCATCTTC 8684 Query 42738 TTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGA-AGGTGTCGATGCCCGGACT 42796 ||||| || ||||| |||||||| ||| | ||| ||| |||| || ||||| || || Sbjct 8683 TTCTCTGGTTCCTTCTGTTCCATCTTTTGGTTGAAGAAGAGAGGTCTC-ATGCCAGGTCT 8625 Query 42797 CACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCT 42856 || || |||||| | || | ||||| || || || | |||||||||||||| Sbjct 8624 TTCCACATCAAACGAATTTATTTCTCGCGACGAAGGACTCCACTGCGACTTTGCCTGCCT 8565 Query 42857 CCTGTTC-TCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCA 42915 || ||| | || || || | || ||| | ||| || | |||||| Sbjct 8564 GCTCTTCAACATGCTAC--AAG--AGAAACCCAGCCAAGAGACCGTGAAGAAGATCATCC 8509 Query 42916 CGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCG 42975 || ||||||||| |||||||||||| |||| || | |||| || ||| | | Sbjct 8508 TTGACGCCGTGGAGTGCGAGAAGGAGTTTGTCACCGAGGCTTTGCCAGTTGGTCTGATTG 8449 Query 42976 GCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCGA 43021 | |||||| | |||| ||| |||| ||| ||| |||||||| Sbjct 8448 GAATGAACGCCAACCTGATGACACAGTATATCGAGTTTGTCGCCGA 8403 >seq1441 Length=33442 Score = 118 bits (130), Expect = 2e-21 Identities = 448/692 (65%), Gaps = 36/692 (5%) Strand=Plus/Minus Query 244290 GTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGG 244349 |||||| | |||||||||| |||| || | |||||| || || | ||| ||||| Sbjct 2881 GTTTGACGTTCCACATGTCATACTGGAGGATTCCCTTGGAAACAGGACAGCCGGGGTAGG 2822 Query 244350 TCGGGTAGGGACCGTCGCGCTG-GGCCAGCTTACAGCTCTCGTCGAGGGCGGCGTAGTAG 244408 || ||| || || | | | |||||||| | || || |||||| ||||| Sbjct 2821 TCTCGTAATATCCCTC-CACAGCGGCCAGCTCCATGGATGCGGTGACGGCGGCAAAGTAG 2763 Query 244409 ATGGTCTCGAAGATCATCTTGTTCATGTC-GCGGG-CCTTGCCGCAGGTGAAGGGGATGC 244466 || ||||| |||| ||||| || |||| || | | || ||||||| | Sbjct 2762 ATCGTCTCCGAGATGTCGCGGTTCAGATCTGCGGCTCCATT--GGAGTCAAAGGGGAGTC 2705 Query 244467 CCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCT 244526 | | ||||| |||||||| ||||| | |||| |||||||||||||||| | Sbjct 2704 GGAGTTTGATGAAAGTGTCGGCCAAACCCTGAATTCCGAGACCGATGGGTCTGTGTCTCA 2645 Query 244527 TGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGT 244586 ||||| | || || || | |||||| |||| |||||||| | ||||||||| | Sbjct 2644 TGTTGCTATTTTTAGCCTCAGGGATGGGGTAGTAGTTTCCGTCGATGATCTTGTTGAGAT 2585 Query 244587 TGCGGGTGATCA---TGCGGAC--GACGTCGGCCAGCAG--CTGAAAGTCGTACTCGTAG 244639 | ||||||| || ||| || | | ||| | || |||||| | | | | Sbjct 2584 TCTTAGTGATCACCTTGGTGACCTGAAGAATGTCAGAAAGTCTCAAAGTCTTGAT-GACG 2526 Query 244640 GGAT-CCTCG--------GCGATGGTGA---------TCCTC-ACAAACTCGTTGAGGGC 244680 || ||||| | | |||| | |||| ||||||| | ||||| Sbjct 2525 TCATACCTCGTACAGCTTGTGGTGGTCAAATTTGTTGTCCTTGACAAACTTGGGCAGGGC 2466 Query 244681 GACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGT 244740 || | ||||| ||||| || || ||||| ||| ||||||| | ||||||||| Sbjct 2465 GATGGATGCCAGATTGCACACCGCAACCTCATCCTGCGCAGTGTACTCCATAATCTCGGT 2406 Query 244741 GCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGC 244800 ||| | ||| || |||||||||| || |||| ||| || ||| ||| |||| ||| Sbjct 2405 GCACAAGTTGCTAGACTTGATGGTTCCGAGGTTCTGTTGGTTGCTCTTTCTGTTGGCGGC 2346 Query 244801 GTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCA 244860 ||||||||||||||| | || |||||||| | ||| | | | | || | | ||| Sbjct 2345 GTCCTTGTAGAGCATATAAGGTGTTCCGGTCTCAATCTGAGAGTCCAAGATGGAGAACCA 2286 Query 244861 GAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCT---GCCTCGTAGCGGGTGTA 244917 || ||| ||||||| |||| | | || ||| | || ||||| | |||| Sbjct 2285 CAGATCCTGGGCCTTGATCGTCTTTCTGGCGAGTCCCGGTGTGGCTTCGTACTTGTTGTA 2226 Query 244918 CAGGGCCTCGAACTCGGGGCCCCAGACCTCGT 244949 || ||| ||||| ||||||||||||| Sbjct 2225 CAACTGCTCAAACTCCTCTCCCCAGACCTCGT 2194 >seq1881 Length=25171 Score = 109 bits (120), Expect = 1e-18 Identities = 346/533 (65%), Gaps = 10/533 (2%) Strand=Plus/Plus Query 42501 GAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTAC 42560 ||||| | ||||| || ||||| ||||| |||||||||||| | || | || ||| Sbjct 17695 GAGGCCAGATGCTTTTATGGCTTTCAGATTGCCATAGAGAACATACATGCCGAAACATAC 17754 Query 42561 GCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCC 42620 | ||| || ||||||| |||| ||| ||| || | ||| | || Sbjct 17755 TCTCTTCTGATCGACACGTATATCCGAGATGAGAAAGAGAAGCACCTCTTATTCCACGCT 17814 Query 42621 ATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGT 42680 || || || || ||||| | |||||||| || ||||| | ||||||| | | Sbjct 17815 ATCGATCACATTCCTTGCATACAAAAGAAGGCAGAGTGGGCAATGCGCTGGATCAACGAT 17874 Query 42681 CCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTC 42740 | ||| | || || ||||| || || |||||| | || || ||||| |||||||| Sbjct 17875 TCGGACTCT---TTTGGAGAGAGACTCGTTGCCTTTGCTGCTGTGGAGGGTATCTTCTTT 17931 Query 42741 TCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACC 42800 || || ||||| ||||||||| ||||| ||| ||| || ||| || || Sbjct 17932 TCTGGTTCCTTCTGCTCCATCTTTTGGCTGAAGAAGAGGGGACTCATGGAGGGTCTTGGA 17991 Query 42801 TTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTG 42860 || || ||| |||| || || || ||||| ||| | ||||| || |||||| | Sbjct 17992 AAATCAAATGAATTCATATCAAGAGATGAAGGGCTACATTGCGACTTCGCTTGCCTCTTA 18051 Query 42861 TTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAG 42920 ||| ||| || || ||||||| || | || || | |||||| ||| Sbjct 18052 TTC---AGCATGCTAAGAAACAAGCCATCACAAGAAGTCGTAAAGATGATCATCTTGGAC 18108 Query 42921 GCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGC--TGCCCGTGTCCCTGGTCGGCA 42978 ||||| || ||||||||||| ||| ||| ||| | ||||| ||| |||| | Sbjct 18109 GCCGTCGATTGTGAGAAGGAGTTTGTCA--CAGACGCCTTACCCGTCGGCCTCATCGGGA 18166 Query 42979 TGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCGACCATCTCCTG 43031 |||| || || |||| |||||||| | | ||||| || | ||| ||| Sbjct 18167 TGAATGCAGATCTGATGTCTCAGTACATCGAATTTGTCGCGGATCGTCTTCTG 18219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944308780473520