Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protostelium_20mycophagum_20[genbank_20GCA_5F002081555.1_202017-04- 06] 2,577 sequences; 39,717,957 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq2030 109 5e-19 seq637 109 5e-19 >seq2030 Length=13636 Score = 109 bits (120), Expect = 5e-19 Identities = 107/138 (78%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 20263 AGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCCATGTCTCCCGACCT 20322 |||||| |||| || ||||||||| || ||||| || || |||||||| | || || Sbjct 12554 AGTTAAAAGGGCGTAAGAGGCAATGTTGAAGGGAACACCTAATCCCATGTCGGCTGATCT 12495 Query 20323 CTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAATTGACATAACAAGTGACA 20382 ||| |||| ||| || || | ||| || | || |||||||||||||| |||| |||||| Sbjct 12494 CTGGTACATCTGGCAAGATAACTCGCCATTGGCCACATAAAATTGACAAAACATGTGACA 12435 Query 20383 GGGCGGAAGCGCCATCAA 20400 || ||||| |||||||| Sbjct 12434 AGGAGGAAGGGCCATCAA 12417 Score = 82.4 bits (90), Expect = 7e-11 Identities = 114/158 (72%), Gaps = 4/158 (3%) Strand=Plus/Minus Query 20612 AGGAACTCCCTGGAGCCATTTTTGTCCCATATCTTGACTCC--TGTTCTTGAAAGCTCCC 20669 |||||||| |||| |||||| |||||| || |||| ||| ||| ||| || | Sbjct 12119 AGGAACTCTTTGGATCCATTTCCGTCCCAGATTTTGATTCCCTTGTCCTTCAATACGT-- 12062 Query 20670 TGGAGTCAGTACTCCCCTTCAGAAACCAAAGCAGCTCTTGCACTACGCCTCGCCAAAACA 20729 | || | ||||||||| | | ||||||||| | ||||| | || || |||||||||| Sbjct 12061 TTGAATTAGTACTCCCACTAATAAACCAAAGTAACTCTTCGGCAACACCACGCCAAAACA 12002 Query 20730 CCCGCTTTGTGGTTAGTAAGGGAAAGTGGTCCCGCAGA 20767 | | |||||| || || | |||||| ||| || ||| Sbjct 12001 CTCTCTTTGTAGTAAGGAGGGGAAAAGAGTCACGAAGA 11964 >seq637 Length=38019 Score = 109 bits (120), Expect = 5e-19 Identities = 107/138 (78%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 20263 AGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCCATGTCTCCCGACCT 20322 |||||| |||| || ||||||||| || ||||| || || |||||||| | || || Sbjct 11443 AGTTAAAAGGGCGTAAGAGGCAATGTTGAAGGGAACACCTAATCCCATGTCGGCTGATCT 11384 Query 20323 CTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAATTGACATAACAAGTGACA 20382 ||| |||| ||| || || | ||| || | || |||||||||||||| |||| |||||| Sbjct 11383 CTGGTACATCTGGCAAGATAACTCGCCATTGGCCACATAAAATTGACAAAACATGTGACA 11324 Query 20383 GGGCGGAAGCGCCATCAA 20400 || ||||| |||||||| Sbjct 11323 AGGAGGAAGGGCCATCAA 11306 Score = 82.4 bits (90), Expect = 7e-11 Identities = 114/158 (72%), Gaps = 4/158 (3%) Strand=Plus/Minus Query 20612 AGGAACTCCCTGGAGCCATTTTTGTCCCATATCTTGACTCC--TGTTCTTGAAAGCTCCC 20669 |||||||| |||| |||||| |||||| || |||| ||| ||| ||| || | Sbjct 11008 AGGAACTCTTTGGATCCATTTCCGTCCCAGATTTTGATTCCCTTGTCCTTCAATACGT-- 10951 Query 20670 TGGAGTCAGTACTCCCCTTCAGAAACCAAAGCAGCTCTTGCACTACGCCTCGCCAAAACA 20729 | || | ||||||||| | | ||||||||| | ||||| | || || |||||||||| Sbjct 10950 TTGAATTAGTACTCCCACTAATAAACCAAAGTAACTCTTCGGCAACACCACGCCAAAACA 10891 Query 20730 CCCGCTTTGTGGTTAGTAAGGGAAAGTGGTCCCGCAGA 20767 | | |||||| || || | |||||| ||| || ||| Sbjct 10890 CTCTCTTTGTAGTAAGGAGGGGAAAAGAGTCACGAAGA 10853 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441358582278680