Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protostelium_20mycophagum_20[genbank_20GCA_5F002081555.1_202017-04- 06] 2,577 sequences; 39,717,957 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq593 147 5e-30 seq2113 145 2e-29 seq1766 136 9e-27 seq717 136 9e-27 seq343 131 4e-25 seq1344 120 7e-22 seq1564 114 3e-20 >seq593 Length=28782 Score = 147 bits (162), Expect = 5e-30 Identities = 163/216 (75%), Gaps = 6/216 (3%) Strand=Plus/Plus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 || |||||||||| || || || |||||||| ||||||| || || |||||||| Sbjct 15667 AGGACGAGATGAAGAGTAGACTCCTTCTGGATATTGTAGTCGGAAAGAGTACGTCCGTCC 15726 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCC 288381 || | || ||||| || ||||| || | ||||||| |||||||||||| || || Sbjct 15727 TCAAGCTGCTTTCCGGCAAAGATGAGTCTCTGTTGATCGGGTGGGATTCCTTCCTTGTCT 15786 Query 288382 TGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGATTCTACTTCGAGCGTGATC 288438 || || || || ||||| || ||||||| || ||| ||||||||||| ||||| Sbjct 15787 TGAATCTTGGCCTTCACATTATCTATAGTGTCTGAACTC---TCTACTTCGAGGGTGATT 15843 Query 288439 GTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 ||||| || |||| |||||||||||| ||||||||| Sbjct 15844 GTCTTTCCTGTCAAAGTCTTGACGAAAATCTGCATT 15879 Score = 145 bits (160), Expect = 2e-29 Identities = 172/232 (74%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 ||| || | ||| | ||| || ||||||| || || || || || |||||||| | Sbjct 28432 TCCTCCTCTGAGACGAAGAACCAGATGAAGAGTAGACTCCTTCTGAATGTTATAGTCTGA 28491 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 ||| || || ||||| |||||||| ||||| |||||||| || | ||||||| | || Sbjct 28492 GAGGGTTCGGCCGTCCTCTAATTGCTTTCCGGCGAAGATGAGTCTCTGTTGATCAGGGGG 28551 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGATTC 288422 |||||||| || || || || || ||||| || || || || | ||| |||| || Sbjct 28552 AATTCCTTCCTTGTCTTGTATCTTGGCTTTTACATTGTCGATGGTATCTGAGCTC---TC 28608 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 ||||||||| ||||| ||||| || || || ||||||||||| || |||||| Sbjct 28609 TACTTCGAGTGTGATTGTCTTTCCAGTGAGGGTCTTGACGAAGATTTGCATT 28660 Score = 109 bits (120), Expect = 1e-18 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 ||||| || | || | || || || |||| || |||||| ||||| || ||||| Sbjct 15421 TGTCCTCCTCTAAGACGCAGGACAAGGTGAAGAGTAGATTCTTTCTGGATGTTGTAGTCA 15480 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 | || || | ||||| || | || ||||| || || || || | |||||| Sbjct 15481 GAAAGAGTTCTGCCGTCCTCAAGCTGCTTTCCGGCAAAAATGAGTCTCTGTTGGTCGGGA 15540 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||||||||||| || || || || || || || || || || |||| ||| |||||| Sbjct 15541 GGGATTCCTTCCTTGTCTTGAATCTTGGCCTTAACATTGTCGATAGTATCTGAGGATTCT 15600 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| | ||||| ||||| ||||| ||||| ||||| || |||||||| Sbjct 15601 ACTTCTAAGGTGATGGTCTTGCCGGTGAGAGTTTTGACAAAAATCTGCAT 15650 Score = 109 bits (120), Expect = 1e-18 Identities = 141/193 (73%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || || ||| | ||||| |||||||| || || ||||| |||||| Sbjct 16144 TCCTTCTGGATGTTGTAATCGCTCAAAGTGCGGCCGTCTTCCAACTGCTTTCCGGCGAAG 16203 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || | ||||||| |||||||||||| || || ||||| || || || || || Sbjct 16204 ATGAGTCTCTGTTGATCGGGTGGGATTCCTTCCTTGTCTTGGATCTTGGCCTTTACATTA 16263 Query 288403 TCTATAGAATCGCTCGATTCT--ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGA 288460 || || | | || | ||| |||||||| ||||| ||||| || || || ||||| | Sbjct 16264 TCGATTG--TGTCTGAACTCTCCACTTCGAGTGTGATTGTCTTTCCAGTTAGTGTCTTAA 16321 Query 288461 CGAATATCTGCAT 288473 |||| || ||||| Sbjct 16322 CGAAGATTTGCAT 16334 Score = 89.7 bits (98), Expect = 1e-12 Identities = 87/112 (78%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 288363 TGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 |||||| |||||||| || || || || ||||| ||||| || || | ||| || || Sbjct 28321 TGGGATGCCTTCTTTGTCTTGTATCTTGGCTTTAACGTTGTCGATTGTATCTGAAGACTC 28380 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || ||||| ||||| ||||| ||||| ||||||||||| || || |||||| Sbjct 28381 GACCTCGAGTGTGATTGTCTTGCCGGTGAGAGTCTTGACAAAAATTTGCATT 28432 >seq2113 Length=21246 Score = 145 bits (160), Expect = 2e-29 Identities = 172/232 (74%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 ||| || | ||| | || ||||| |||| ||| || || |||||||| ||||| | Sbjct 21149 TCCTCCTCTGAGACGGAGGACGAGGTGAAGAGTGGACTCCTTCTGGATATTGTAGTCAGA 21090 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 ||| || |||||||| || | ||| ||||| |||||||||| | |||||| | || Sbjct 21089 GAGAGTACGTCCGTCCTCGAGTTGCTTTCCGGCGAAGATCAATCTTTGTTGATCAGGGGG 21030 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGATTC 288422 ||||| || || || ||||| |||||||| ||||| || || | || |||| || Sbjct 21029 AATTCCCTCCTTGTCTTGGATCTTCGCTTTTACGTTGTCGATGGTGTCAGAGCTC---TC 20973 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || ||||| ||||| ||||| ||||| || ||||||||||| ||||||||| Sbjct 20972 GACCTCGAGGGTGATAGTCTTTCCGGTGAGGGTCTTGACGAAGATCTGCATT 20921 >seq1766 Length=5059 Score = 136 bits (150), Expect = 9e-27 Identities = 161/217 (74%), Gaps = 6/217 (3%) Strand=Plus/Plus Query 288261 AAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTC 288320 ||| |||||||||| || || || || || |||||||| | ||| || || ||||| Sbjct 4496 AAGAACGAGATGAAGAGTAGACTCCTTCTGAATGTTATAGTCTGAGAGGGTTCGGCCGTC 4555 Query 288321 TTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATC 288380 |||||||| ||||| || || || || | ||||||| | || |||||||| || || Sbjct 4556 CTCTAATTGCTTTCCGGCAAAAATGAGTCTCTGTTGATCAGGGGGAATTCCTTCCTTGTC 4615 Query 288381 CTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGATTCTACTTCGAGCGTGAT 288437 ||||| || ||||| || || || || | || |||| ||||||||||| ||||| Sbjct 4616 TTGGATCTTGGCTTTTACATTGTCGATGGTGTCTGAGCTC---TCTACTTCGAGTGTGAT 4672 Query 288438 CGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 ||||| || || || ||||||||||| || |||||| Sbjct 4673 TGTCTTTCCAGTGAGGGTCTTGACGAAGATTTGCATT 4709 >seq717 Length=13837 Score = 136 bits (150), Expect = 9e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 ||| || | ||| | ||| || || || | ||| ||||||||||| || ||||||| Sbjct 163 TCCTCCTCTGAGACGAAGAACAAGGTGGAGGGTGGACTCTTTTTGGATGTTGTAGTCGGA 222 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 ||| ||||| || || ||||| || ||||| |||||||||| | ||||||| || Sbjct 223 GAGGGTGCGCCCATCCTCTAACTGCTTTCCGGCGAAGATCAATCTCTGTTGATCGGGAGG 282 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 ||||||||| || || || || || || || ||||| || || | ||| || ||||| Sbjct 283 GATTCCTTCCTTGTCTTGAATCTTGGCCTTGACGTTATCGATGGTGTCGGAGGACTCTAC 342 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||| | || || ||||| || || || ||||| ||||| |||||||| Sbjct 343 TTCCAAAGTAATAGTCTTTCCTGTGAGGGTCTTTACGAAAATCTGCAT 390 Score = 104 bits (114), Expect = 6e-17 Identities = 121/162 (75%), Gaps = 6/162 (4%) Strand=Plus/Plus Query 288316 CCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCT 288372 ||||| || | || ||||| || ||||| || | ||||||| || ||| |||||| Sbjct 5 CCGTCCTCAAGCTGCTTTCCGGCAAAGATGAGTCTCTGTTGA---TCGGGGGGAATTCCT 61 Query 288373 TCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGC 288432 || || || || || || ||||| ||||| || || | ||| || || || || || Sbjct 62 TCCTTGTCTTGAATCTTGGCTTTAACGTTGTCGATGGTGTCGGAGGACTCGACCTCCAGG 121 Query 288433 GTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || |||||||| || |||| |||||||||||||||||||||| Sbjct 122 GTAATCGTCTTTCCAGTCAAAGTCTTGACGAATATCTGCATT 163 >seq343 Length=26413 Score = 131 bits (144), Expect = 4e-25 Identities = 160/217 (74%), Gaps = 6/217 (3%) Strand=Plus/Minus Query 288261 AAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTC 288320 ||| |||||||||| || || || || || |||||||| | ||| || || || || Sbjct 288 AAGAACGAGATGAAGAGTAGACTCCTTCTGAATGTTATAGTCTGAGAGGGTACGGCCATC 229 Query 288321 TTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATC 288380 || | || ||||| || || || || | ||||||| |||||| |||||||| || Sbjct 228 CTCGAGCTGCTTTCCGGCAAAAATGAGTCTCTGTTGATCGGGTGGGATGCCTTCTTTGTC 169 Query 288381 CTGGATTTTCGCTTTCACGTTTTCTATAGAATCG---CTCGATTCTACTTCGAGCGTGAT 288437 || || || ||||| ||||| || |||| || ||| ||||||||||| ||||| Sbjct 168 TTGTATCTTGGCTTTTACGTTGTCGATAGTGTCTGAACTC---TCTACTTCGAGGGTGAT 112 Query 288438 CGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 ||||| || |||| |||||||||||| ||||||||| Sbjct 111 TGTCTTTCCAGTCAAAGTCTTGACGAAAATCTGCATT 75 >seq1344 Length=40060 Score = 120 bits (132), Expect = 7e-22 Identities = 140/189 (74%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| |||||||| | ||| || |||||||| || | ||| ||||| ||||| Sbjct 24246 TCCTTCTGGATGTTATAGTCAGAGAGAGTACGTCCGTCCTCGAGTTGCTTTCCGGCGAAA 24305 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || | |||||| |||||||| || || || || ||||| || || ||||| Sbjct 24306 ATGAGTCTCTGTTGGTCGGGGGGGATTCCCTCCTTGTCTTGAATTTTAGCCTTGACGTTG 24365 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || |||||||||||||| ||||| ||||| || || || ||||| ||| Sbjct 24366 TCGATGGTGTCTGAAGATTCTACTTCGAGGGTGATTGTCTTTCCTGTAAGTGTCTTTACG 24425 Query 288463 AATATCTGC 288471 || || ||| Sbjct 24426 AAGATTTGC 24434 Score = 87.8 bits (96), Expect = 4e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||||| ||||| ||||| || || ||||| || || || | || ||||||||| Sbjct 23874 ATTCCTTCCTTATCTTGGATCTTTGCCTTCACATTGTCGATGGTGTCTGAAGATTCTACT 23933 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || || ||||| ||||| || |||| |||||||| || ||||||||| Sbjct 23934 TCAAGTGTGATTGTCTTTCCAGTCAAGGTCTTGACAAAGATCTGCATT 23981 >seq1564 Length=26684 Score = 114 bits (126), Expect = 3e-20 Identities = 143/195 (73%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || || || || ||||| | ||| ||||| ||||| || | || ||||| || || Sbjct 11788 TCCTTCTGAATGTTGTAGTCAGAGAGAGTGCGGCCGTCCTCAAGCTGCTTTCCGGCAAAA 11729 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || | |||||| |||||||| || || || ||||| || ||||| ||||| Sbjct 11728 ATAAGTCTCTGTTGGTCGGGGGGGATTCCCTCCTTGTCTTGGATCTTGGCTTTTACGTTG 11669 Query 288403 TCTATAGAATC---GCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || | ||| |||| || || ||||| ||||| ||||| || |||| ||||||| Sbjct 11668 TCGATGGTATCAGAGCTC---TCGACCTCGAGGGTGATGGTCTTTCCAGTCAAAGTCTTG 11612 Query 288460 ACGAATATCTGCATT 288474 ||||| ||||||||| Sbjct 11611 ACGAAGATCTGCATT 11597 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179615450392206