Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protostelium_20mycophagum_20[genbank_20GCA_5F002081555.1_202017-04- 06] 2,577 sequences; 39,717,957 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq1564 140 4e-28 seq2313 104 3e-17 seq1239 104 3e-17 seq1378 102 9e-17 seq1344 96.9 4e-15 seq1766 84.2 2e-11 seq1024 82.4 8e-11 >seq1564 Length=26684 Score = 140 bits (154), Expect = 4e-28 Identities = 170/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 |||||||| | ||| | ||| | || | ||| |||||| || |||||||| |||| Sbjct 12052 CCTCCTCTGAGACGGAGCACAAGGTGAAGAGTGGACTCCTTCTGGATATTGTAGTCAGAG 11993 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 ||||| || |||| || |||||||| |||||||| ||||||| ||| ||||||| || Sbjct 11992 AGAGTGCGGCCGTCCTCGAGCTGCTTTCCAGCGAAGATGAGTCTCTGTTGGTCGGGGGGG 11933 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCC-ACCGTGTCGCTCGATTCCAC 42160 | | ||||||||| ||| || |||| ||| | | | |||||| || ||||| Sbjct 11932 ATTCCCTCCTTGTCTTGGATCTTAGCCTTGA-CGTTGTCGATGGTGTCGGAGGACTCCAC 11874 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 || | |||||||| ||||| || || ||||| ||||||||||||||| Sbjct 11873 TTCCAAAGTGATGGTCTTGCCGGTGAGGGTCTTGACAAAGATTTGCATT 11825 >seq2313 Length=44285 Score = 104 bits (114), Expect = 3e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 |||||||| | ||| | || | || | ||| |||||||||||| ||||| || Sbjct 27871 CCTCCTCTGAGACGAAGAACAAGGTGGAGCGTGGACTCCTTTTGAATGTTGTAGTCGCTG 27812 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || || | |||| ||||||||||| || ||||| ||||||| ||| ||||| | ||| Sbjct 27811 AGGGTTCTTCCGTCCTCTAGCTGCTTTCCGGCGAAGATGAGTCTCTGTTGGTCTGGTGGA 27752 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCAC 42160 | || |||||||| ||| || |||| ||| | | | || || ||||| || Sbjct 27751 ATGCCTTCCTTGTCTTGGATCTTAGCCTTGA-CGTTGTCTATTGTATCTGAAGATTCAAC 27693 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 |||| ||||| || || || || || |||||||| ||||| |||||| Sbjct 27692 TTCGAGGGTGATTGTCTTTCCAGTGAGGGTCTTTACGAAGATCTGCATT 27644 >seq1239 Length=29077 Score = 104 bits (114), Expect = 3e-17 Identities = 168/235 (71%), Gaps = 10/235 (4%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 |||||||| || | |||||| | || | ||| ||| || || |||||||| || | Sbjct 23344 CCTCCTCTCAATCTCAACACGAGGTGAAGGGTGGACTCTTTCTGGATATTGTAGTCTGAG 23403 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || |||| |||| || || ||||| || ||||| ||||||| || ||||||| || Sbjct 23404 AGGGTCCTGCCGTCCTCGAGTTGCTTTCCGGCGAAAATGAGTCTTTGTTGGTCGGGAGGG 23463 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCGTCGCC-ACCGTGTC---GCTCGATT 42156 | || |||||||||| ||| | || | |||| ||| | | | ||||| |||| | Sbjct 23464 ATGCCCTCCTTGTCC-TGAATCTTGGCCTTGA-CGTTGTCGATGGTGTCTGAGCTC---T 23518 Query 42157 CCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 |||| || | |||||||| || || || | || ||||||||||| ||||| || Sbjct 23519 CCACCTCCAAAGTGATGGTCTTTCCGGTCAATGTTTTTACAAAGATCTGCATGTT 23573 >seq1378 Length=10532 Score = 102 bits (112), Expect = 9e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 ||||||||||| | ||| || | ||| ||||| |||||| ||||| || || || | Sbjct 10467 CCTCCTCTTAATCTCAATACAAGATGTAATGTAGACTCCTTCTGAATGTTATAGTCTGAG 10408 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || || || | || || |||||||| || || || ||||||| ||| ||||||| || Sbjct 10407 AGGGTACGGCCATCCTCGAGCTGCTTTCCGGCAAAGATGAGTCTCTGTTGGTCGGGGGGA 10348 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 42161 | | |||||||| ||| || |||| | | | ||||| ||||| || Sbjct 10347 ATTCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTATCGATGGTGTCAGATGATTCGACC 10288 Query 42162 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTC 42212 || | |||||||| || || || || ||||| || ||||| ||||| ||| Sbjct 10287 TCTAAGGTGATGGTCTTTCCGGTGAGAGTCTTCACGAAGATCTGCATGTTC 10237 >seq1344 Length=40060 Score = 96.9 bits (106), Expect = 4e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 |||||||| | ||| | ||||| || | ||| |||||| ||||| ||||| || | Sbjct 23982 CCTCCTCTGAGACGAAGTACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCTGAG 24041 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || || || | || || || ||||| || ||||| ||||||| ||| ||||||| || Sbjct 24042 AGTGTGCGTCCATCCTCCAGTTGCTTTCCGGCGAAGATGAGTCTCTGTTGGTCGGGGGGA 24101 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 42161 | | ||||| || ||| || ||| | | | | ||||| ||||| || Sbjct 24102 ATTCCTTCCTTATCTTGGATCTTGGCTTTAACATTGTCGATAGTGTCTGAAGATTCGACT 24161 Query 42162 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 || | ||||| || ||||| || || || || ||||||||||||||| Sbjct 24162 TCCAAGGTGATTGTCTTGCCGGTGAGAGTTTTGACAAAGATTTGCATT 24209 >seq1766 Length=5059 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/231 (68%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 |||||||| | ||| || || || || | || |||||||||||||||||| || Sbjct 4710 CCTCCTCTGAGACGTAAAACTAAGTGGAGAGTAGACTCCTTTTGAATATTGTAGTCGCTA 4769 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || || || | || |||| ||||| || ||||| ||||||| ||| || |||| ||| Sbjct 4770 AGTGTGCGTCCATCCTCTAATTGCTTTCCGGCGAAAATGAGTCTCTGTTGATCGGGTGGG 4829 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCC 42158 | | ||||||||| || || ||| | | | | ||||| |||| ||| Sbjct 4830 ATTCCCTCCTTGTCTTGTATCTTGGCTTTTACATTGTCGATGGTGTCTGAGCTC---TCC 4886 Query 42159 ACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 || |||| ||||| || || || || | ||||| || || || |||||| Sbjct 4887 ACTTCGAGGGTGATTGTCTTTCCAGTCAAAGTCTTAACGAAAATCTGCATT 4937 >seq1024 Length=14032 Score = 82.4 bits (90), Expect = 8e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 |||||||| | ||| || ||||| || | || ||||| || || || || || | Sbjct 14007 CCTCCTCTAAGACGTAATACCAAGTGGAGAGTCGATTCCTTCTGGATGTTATAGTCGCTC 13948 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 | ||| | |||| || | |||||| || ||||| ||||||| ||| ||||||| ||| Sbjct 13947 AAAGTTCTGCCGTCTTCCAACTGCTTTCCGGCGAAGATGAGTCTCTGTTGGTCGGGTGGG 13888 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 42161 | | ||| ||||| ||| || ||||| | | | || || || || || Sbjct 13887 ATTCCCTCTTTGTCTTGGATCTTGGCTTTGACATTGTCGATGGTATCTGAAGACTCGACC 13828 Query 42162 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 || | || || || || || || || |||||||| ||||||||||| || Sbjct 13827 TCAAGTGTAATTGTCTTTCCTGTGAGTGTCTTTACGAAGATTTGCATGTT 13778 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543195301757680