Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protostelium_20mycophagum_20[genbank_20GCA_5F002081555.1_202017-04- 06] 2,577 sequences; 39,717,957 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq1441 141 9e-29 >seq1441 Length=33442 Score = 141 bits (156), Expect = 9e-29 Identities = 273/401 (68%), Gaps = 4/401 (1%) Strand=Plus/Plus Query 93892 GCCACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTG 93951 ||||| || || || |||||| | || || || || ||||||||||| || ||||| Sbjct 1672 GCCACACCCACACTTTTCAACTCTGGCACACCAAGACCTCAGATGTCTTCCTGCTTCCTT 1731 Query 93952 ATGACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACC 94011 || | |||| || || ||| || || | ||||| || ||| | || || | Sbjct 1732 TTGGACATGAAGGAGGATTCTATCGAGGGTATCTACGACACTCTAAAGCAGTGCGCTCTC 1791 Query 94012 ATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGC--CAGGGGTT 94069 ||||| |||| || || || ||||| | || |||| | | | || ||| | Sbjct 1792 ATCTCTAAATCTGCCGGAGGCATCGGTCTGTCTGCCCACAAGATCAGAGCTGCAGACAGT 1851 Query 94070 CCTACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCA 94129 |||||| | || || ||||| |||| || || |||||||| ||||| | ||||||| Sbjct 1852 --TACATCAGAGGAACAAATGGTGCCTCTAATGGACTCGTCCCCATGCTTAGAGTCTTCA 1909 Query 94130 ACAACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCT 94189 | || | || || || || ||||| || ||||| | |||||||||| | || || || | Sbjct 1910 ATGACACTGCACGTTATGTCGACCAAGGAGGTGGTAAGAGGAAGGGTGCCTTTGCCGTTT 1969 Query 94190 ATCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCA 94249 |||| ||||| ||||| || ||| | | || | || || ||||||| ||||| | Sbjct 1970 ATCTGGAGCCATGGCATGCCGACATCACCGAGTTTTTGGATCTCAGAAAGAATCACGGAA 2029 Query 94250 ACGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGG 94290 | || | ||| || | |||||||| ||||| |||||| Sbjct 2030 AAGAAGAGAGGAGAGCACGTGACCTCTTTTACGCCCTCTGG 2070 Score = 91.5 bits (100), Expect = 1e-13 Identities = 131/182 (72%), Gaps = 2/182 (1%) Strand=Plus/Plus Query 94468 ATCGTGGACGTACAGGTGGAGACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAAC 94527 ||| ||||| ||| | ||||| || || || || || | | ||||||| | | |||| Sbjct 2295 ATCTTGGACTCTCAGATTGAGACCGGAACACCTTATATGCTCTACAAGGACGCCGCCAAC 2354 Query 94528 GCCAAGTCCAACCAGCAGCACCTCGGGGTGATCAAGAGCTCGAATCT-GTGCACCGAGAT 94586 ||| |||||| ||| ||||||| |||||| || | | || |||||||||||| Sbjct 2355 AGAAAGAGCAACCAACAGAACCTCGGAACCATCAAGT-CTAGCAACTTGTGCACCGAGAT 2413 Query 94587 TGTCGAGTATACTTCTCCGGACGAGATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTC 94646 | | ||||| ||| | | ||| ||| |||| ||||| || |||| |||||| |||| | Sbjct 2414 TATGGAGTACACTGCGCAGGATGAGGTTGCGGTGTGCAATCTGGCATCCATCGCCCTGCC 2473 Query 94647 CA 94648 || Sbjct 2474 CA 2475 Score = 91.5 bits (100), Expect = 1e-13 Identities = 92/120 (77%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 95101 GTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAACAACGAGTCGTTCGAA 95160 || |||||||||||||| || |||| ||||||| | |||||||| |||| ||||| Sbjct 2993 GTTGCCCCCATGCCCACCGCTACCACTTCGCAGATTTTAGGCAACAATGAGTGCTTCGAG 3052 Query 95161 CCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGGAATTCCCCGTCATCAAC 95220 || | ||| |||||| |||||| ||| | || | || || |||||| || |||||||| Sbjct 3053 CCTTACACTTCCAACATGTACAGCAGAAGAGTTTTGGCGGGAGAATTCACCATCATCAAC 3112 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494707263728920